Plasmid NZ_CP094854.1

Sequence

Nucleotide Information

Accession NZ_CP094854.1
Description Staphylococcus aureus strain NY2010 plasmid pNY2010, complete sequence
Source refseq
Topology circular
Length 2402 bp
GC Content 0.31 %
Created at NCBI April 8, 2022



Assembly

Genome Data Information

Accession GCF_022832835.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 27065448

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 40N;116E
Original Query Type coordinates
Coordinates (Lat/Lon) 40.00/116.00
Address 京蔚高速, 大园, 黄台村, Mentougou District, Beijing, China

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Secondary tuberculosis
DOID/SYMP
  • Tuberculosis (DOID:399 )
    • A primary bacterial infectious disease that is located_in lungs, located_in lymph nodes, located_in pericardium, located_in brain, located_in pleura or located_in gastrointestinal tract, has_material_basis_in Mycobacterium tuberculosis, which is transmitted_by droplets released into the air when an infected person coughs or sneezes.
    • Has_material_basis_in: ['mycobacterium tuberculosis']

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP094856.1 See Comparison
NC_016140.1 See Comparison
NC_019139.1 See Comparison
NC_013305.1 See Comparison
NC_016140.1 See Comparison
NZ_CP094856.1 See Comparison
NC_013305.1 See Comparison
NZ_MN251856.1 See Comparison
NZ_MN251858.1 See Comparison
NZ_MN251857.1 See Comparison
NZ_CP058616.1 See Comparison
NC_016140.1 See Comparison
NC_019139.1 See Comparison
NZ_MN251856.1 See Comparison
NZ_MN251858.1 See Comparison
NZ_MN251857.1 See Comparison
NC_013305.1 See Comparison
NZ_MN251856.1 See Comparison
NZ_MN251858.1 See Comparison
NZ_MN251857.1 See Comparison
NZ_CP058616.1 See Comparison
NC_016140.1 See Comparison
NC_019139.1 See Comparison
NZ_CP094856.1 See Comparison
NC_013305.1 See Comparison
NZ_CP058616.1 See Comparison
NZ_CP094856.1 See Comparison
NC_019139.1 See Comparison
NZ_MN251856.1 See Comparison
NZ_MN251858.1 See Comparison
NZ_MN251857.1 See Comparison
NZ_MN251856.1 See Comparison
NZ_CP058616.1 See Comparison
NC_016140.1 See Comparison
NC_019139.1 See Comparison
NZ_CP094856.1 See Comparison
NC_013305.1 See Comparison
NZ_MN251858.1 See Comparison
NZ_MN251857.1 See Comparison
NZ_CP058616.1 See Comparison
NC_016140.1 See Comparison
NZ_CP094854.1 See Comparison
NZ_CP094856.1 See Comparison
NC_013305.1 See Comparison
NC_019139.1 See Comparison
NZ_CP094856.1 See Comparison
NZ_MN251856.1 See Comparison
NZ_MN251858.1 See Comparison
NZ_MN251857.1 See Comparison
NZ_CP058616.1 See Comparison
NZ_MN251856.1 See Comparison
NC_016140.1 See Comparison
NC_019139.1 See Comparison
NC_013305.1 See Comparison
NZ_MN251858.1 See Comparison
NZ_MN251857.1 See Comparison
NZ_CP058616.1 See Comparison


Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2