Plasmid NC_016140.1

Sequence

Nucleotide Information

Accession NC_016140.1
Description Staphylococcus hyicus plasmid p7313178-1, complete sequence
Source refseq
Topology circular
Length 2407 bp
GC Content 0.31 %
Created at NCBI Nov. 4, 2012



Biosample

Curated Collection Information
Accession 14226100

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Denmark
Original Query Type name
Coordinates (Lat/Lon) 56.21/9.30
Address Denmark

ECOSYSTEM
Original Query pig
Classification host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP121206.1 See Comparison
NZ_CP115888.1 See Comparison
NZ_CP096538.1 See Comparison
NZ_CP093178.1 See Comparison
NZ_CP098730.1 See Comparison
NZ_CP094854.1 See Comparison
NZ_CP094856.1 See Comparison
NZ_CP010404.1 See Comparison
NC_022228.1 See Comparison
NC_019139.1 See Comparison
NC_018969.1 See Comparison
NC_013305.1 See Comparison
NZ_LR130514.1 See Comparison
NC_010685.1 See Comparison
NZ_CP029648.1 See Comparison
NZ_CP129368.1 See Comparison
CP027424.1 See Comparison
CP127673.1 See Comparison
CP127589.1 See Comparison
CP127756.1 See Comparison
CP127732.1 See Comparison
CP127531.1 See Comparison
CP127535.1 See Comparison
CP127529.1 See Comparison
CP127533.1 See Comparison
LC784003.1 See Comparison
NZ_CP151116.1 See Comparison
NZ_LC086373.1 See Comparison
NZ_CP142859.1 See Comparison
NZ_MN251856.1 See Comparison
NZ_MN251858.1 See Comparison
NZ_MN251857.1 See Comparison
NZ_MN251855.1 See Comparison
NZ_MH423313.1 See Comparison
NZ_CP093178.1 See Comparison
NZ_CP121206.1 See Comparison
NZ_CP115888.1 See Comparison
NZ_CP047825.1 See Comparison
NZ_CP096538.1 See Comparison
NZ_CP094856.1 See Comparison
NZ_CP098730.1 See Comparison
NZ_CP010404.1 See Comparison
NZ_CP094854.1 See Comparison
NC_013305.1 See Comparison
NC_016140.1 See Comparison
NC_019139.1 See Comparison
NZ_CP151116.1 See Comparison
NC_018969.1 See Comparison
NC_010685.1 See Comparison
NZ_LR130514.1 See Comparison
NZ_CP029648.1 See Comparison
CP027424.1 See Comparison
CP127531.1 See Comparison
CP127535.1 See Comparison
CP127529.1 See Comparison
CP127533.1 See Comparison
NC_022228.1 See Comparison
NZ_CP129368.1 See Comparison
CP127756.1 See Comparison
CP127732.1 See Comparison
CP127673.1 See Comparison
CP127589.1 See Comparison
NZ_CP115888.1 See Comparison
LC784003.1 See Comparison
NZ_LC086373.1 See Comparison
NZ_MN251856.1 See Comparison
NZ_MN251858.1 See Comparison
NZ_MN251857.1 See Comparison
NZ_MN251855.1 See Comparison
NZ_MH423313.1 See Comparison
NZ_CP047825.1 See Comparison
NZ_CP121206.1 See Comparison
NZ_CP142859.1 See Comparison
NZ_CP094854.1 See Comparison
NZ_CP093178.1 See Comparison
NZ_CP098730.1 See Comparison
NZ_CP096538.1 See Comparison
NZ_CP094856.1 See Comparison
NC_013305.1 See Comparison
NC_022228.1 See Comparison
NC_019139.1 See Comparison
NZ_CP010404.1 See Comparison
CP027424.1 See Comparison
NZ_LR130514.1 See Comparison
NC_018969.1 See Comparison
NC_010685.1 See Comparison
NZ_CP029648.1 See Comparison
CP127533.1 See Comparison
NZ_CP129368.1 See Comparison
NZ_CP142859.1 See Comparison
CP127756.1 See Comparison
CP127732.1 See Comparison
NZ_CP151116.1 See Comparison
CP127673.1 See Comparison
CP127589.1 See Comparison
CP127531.1 See Comparison
CP127535.1 See Comparison
CP127529.1 See Comparison
LC784003.1 See Comparison
NZ_LC086373.1 See Comparison
NZ_MH423313.1 See Comparison
NZ_MN251856.1 See Comparison
NZ_MN251858.1 See Comparison
NZ_MN251857.1 See Comparison
NZ_MN251855.1 See Comparison
NZ_CP094854.1 See Comparison
NZ_CP047825.1 See Comparison
NZ_CP121206.1 See Comparison
NZ_CP115888.1 See Comparison
NZ_CP098730.1 See Comparison
NZ_CP096538.1 See Comparison
NZ_CP093178.1 See Comparison
NZ_CP094856.1 See Comparison
NC_022228.1 See Comparison
NZ_CP010404.1 See Comparison
NC_019139.1 See Comparison
NC_018969.1 See Comparison
NC_013305.1 See Comparison
CP127673.1 See Comparison
NZ_LR130514.1 See Comparison
CP027424.1 See Comparison
NZ_CP129368.1 See Comparison
CP127756.1 See Comparison
CP127732.1 See Comparison
NC_010685.1 See Comparison
NZ_CP029648.1 See Comparison
CP127589.1 See Comparison
CP127531.1 See Comparison
CP127535.1 See Comparison
CP127529.1 See Comparison
CP127533.1 See Comparison
LC784003.1 See Comparison
NZ_CP151116.1 See Comparison
NZ_LC086373.1 See Comparison
NZ_CP142859.1 See Comparison
NZ_CP115888.1 See Comparison
NZ_MN251856.1 See Comparison
NZ_MN251858.1 See Comparison
NZ_MN251857.1 See Comparison
NZ_MN251855.1 See Comparison
NZ_MH423313.1 See Comparison
NZ_CP121206.1 See Comparison
NZ_CP047825.1 See Comparison
NZ_CP094856.1 See Comparison
NZ_CP096538.1 See Comparison
NZ_CP093178.1 See Comparison
NZ_CP098730.1 See Comparison
CP127673.1 See Comparison
NZ_CP094854.1 See Comparison
NZ_CP010404.1 See Comparison
NC_019139.1 See Comparison
NC_018969.1 See Comparison
NC_010685.1 See Comparison
NZ_CP029648.1 See Comparison
CP027424.1 See Comparison
NZ_CP129368.1 See Comparison
CP127756.1 See Comparison
CP127732.1 See Comparison
NC_022228.1 See Comparison
NC_013305.1 See Comparison
NZ_LR130514.1 See Comparison
CP127589.1 See Comparison
CP127531.1 See Comparison
CP127535.1 See Comparison
CP127529.1 See Comparison
CP127533.1 See Comparison
LC784003.1 See Comparison
NZ_CP151116.1 See Comparison
NZ_CP142859.1 See Comparison
NZ_CP115888.1 See Comparison
NZ_LC086373.1 See Comparison
NZ_MN251856.1 See Comparison
NZ_MN251858.1 See Comparison
NZ_MN251857.1 See Comparison
NZ_MN251855.1 See Comparison
NZ_CP047825.1 See Comparison
NZ_CP121206.1 See Comparison
NZ_MH423313.1 See Comparison
NZ_CP096538.1 See Comparison
NZ_CP093178.1 See Comparison
NC_019139.1 See Comparison
NZ_CP098730.1 See Comparison
NZ_CP094854.1 See Comparison
NZ_CP094856.1 See Comparison
NC_022228.1 See Comparison
NZ_CP010404.1 See Comparison
NC_013305.1 See Comparison
NC_018969.1 See Comparison
NZ_LR130514.1 See Comparison
NC_010685.1 See Comparison
NZ_CP029648.1 See Comparison
NZ_CP129368.1 See Comparison
CP027424.1 See Comparison
CP127673.1 See Comparison
CP127589.1 See Comparison
CP127756.1 See Comparison
CP127531.1 See Comparison
CP127732.1 See Comparison
CP127535.1 See Comparison
CP127529.1 See Comparison
CP127533.1 See Comparison
NZ_CP142859.1 See Comparison
NZ_CP151116.1 See Comparison
NZ_LC086373.1 See Comparison
LC784003.1 See Comparison
NZ_MN251856.1 See Comparison
NZ_MN251858.1 See Comparison
NZ_MN251857.1 See Comparison
NZ_MN251855.1 See Comparison
NZ_CP047825.1 See Comparison
NZ_MH423313.1 See Comparison
NZ_CP096538.1 See Comparison
NZ_CP121206.1 See Comparison
NZ_CP115888.1 See Comparison
NZ_CP093178.1 See Comparison
NZ_CP094854.1 See Comparison
NZ_CP098730.1 See Comparison
NZ_CP094856.1 See Comparison
NC_019139.1 See Comparison
NZ_CP010404.1 See Comparison
NC_013305.1 See Comparison
NC_018969.1 See Comparison
NC_010685.1 See Comparison
NC_022228.1 See Comparison
NZ_CP129368.1 See Comparison
NZ_CP029648.1 See Comparison
NZ_LR130514.1 See Comparison
CP027424.1 See Comparison
CP127673.1 See Comparison
CP127756.1 See Comparison
CP127732.1 See Comparison
CP127589.1 See Comparison
CP127531.1 See Comparison
CP127535.1 See Comparison
CP127529.1 See Comparison
CP127533.1 See Comparison
NZ_CP142859.1 See Comparison
NZ_CP151116.1 See Comparison
LC784003.1 See Comparison
NZ_CP047825.1 See Comparison
NZ_MN251856.1 See Comparison
NZ_MN251858.1 See Comparison
NZ_MN251857.1 See Comparison
NZ_MN251855.1 See Comparison
NZ_MH423313.1 See Comparison
NZ_LC086373.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2