Plasmid NZ_CP093952.1

Sequence

Nucleotide Information

Accession NZ_CP093952.1
Description Enterococcus faecium strain NY11066 plasmid pNY11066-5, complete sequence
Source refseq
Topology circular
Length 2056 bp
GC Content 0.38 %
Created at NCBI March 30, 2022



Assembly

Genome Data Information

Accession GCF_022699565.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 26754719

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 36N;120E
Original Query Type coordinates
Coordinates (Lat/Lon) 36.00/120.00
Address 北西阿陀, Qingdao, Shandong, 266000, China

ECOSYSTEM
Original Query Homo sapiens,sanies
Classification host_associated,wound
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Post operation
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_LR135427.1 See Comparison
AP031253.1 See Comparison
NZ_CP059803.1 See Comparison
NZ_CP062275.1 See Comparison
NZ_CP083477.1 See Comparison
NZ_CP093956.1 See Comparison
NZ_CP085904.1 See Comparison
NZ_CP085916.1 See Comparison
NZ_CP040744.1 See Comparison
NZ_CP075610.1 See Comparison
NZ_CP072717.1 See Comparison
NZ_CP040707.1 See Comparison
NZ_LR135427.1 See Comparison
NZ_LR135234.1 See Comparison
NZ_CP062275.1 See Comparison
AP031253.1 See Comparison
NZ_CP085904.1 See Comparison
NZ_CP059803.1 See Comparison
NZ_CP093956.1 See Comparison
NZ_CP093952.1 See Comparison
NZ_CP085916.1 See Comparison
NZ_CP075610.1 See Comparison
NZ_CP083477.1 See Comparison
NZ_CP040744.1 See Comparison
NZ_CP072717.1 See Comparison
NZ_CP040707.1 See Comparison
NZ_CP059803.1 See Comparison
NZ_LR135234.1 See Comparison
NZ_CP062275.1 See Comparison
NZ_LR135427.1 See Comparison
AP031253.1 See Comparison
NZ_CP083477.1 See Comparison
NZ_CP093956.1 See Comparison
NZ_CP085904.1 See Comparison
NZ_CP085916.1 See Comparison
NZ_CP075610.1 See Comparison
NZ_CP062275.1 See Comparison
NZ_CP072717.1 See Comparison
NZ_CP040744.1 See Comparison
NZ_CP040707.1 See Comparison
NZ_LR135234.1 See Comparison
NZ_LR135427.1 See Comparison
AP031253.1 See Comparison
NZ_LR135427.1 See Comparison
NZ_CP059803.1 See Comparison
NZ_CP093956.1 See Comparison
NZ_CP083477.1 See Comparison
NZ_CP075610.1 See Comparison
NZ_CP040744.1 See Comparison
NZ_CP040707.1 See Comparison
NZ_CP085904.1 See Comparison
NZ_CP085916.1 See Comparison
NZ_CP072717.1 See Comparison
NZ_LR135234.1 See Comparison
AP031253.1 See Comparison
NZ_CP062275.1 See Comparison
NZ_CP093956.1 See Comparison
NZ_CP059803.1 See Comparison
NZ_CP083477.1 See Comparison
NZ_CP085904.1 See Comparison
NZ_CP085916.1 See Comparison
NZ_CP075610.1 See Comparison
NZ_CP085904.1 See Comparison
NZ_CP072717.1 See Comparison
NZ_CP040744.1 See Comparison
NZ_CP040707.1 See Comparison
NZ_LR135427.1 See Comparison
NZ_CP059803.1 See Comparison
NZ_CP093956.1 See Comparison
NZ_LR135234.1 See Comparison
AP031253.1 See Comparison
NZ_CP062275.1 See Comparison
NZ_CP085916.1 See Comparison
NZ_CP072717.1 See Comparison
NZ_CP083477.1 See Comparison
NZ_CP075610.1 See Comparison
NZ_CP040744.1 See Comparison
NZ_CP040707.1 See Comparison
NZ_LR135234.1 See Comparison


Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore