Plasmid NZ_CP092549.1
Sequence
Nucleotide Information
| Accession | NZ_CP092549.1 |
|---|---|
| Description | Staphylococcus aureus strain VMRSA-WC083 plasmid unnamed2, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 24653 bp |
| GC Content | 0.29 % |
| Created at NCBI | March 26, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Staphylococcus aureus (1280) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Bacillota (1239) |
| Class | Bacilli (91061) |
| Order | Bacillales (1385) |
| Family | Staphylococcaceae (90964) |
| Genus | Staphylococcus (1279) |
| Species | Staphylococcus_aureus (1280) |
| Strain |
Biosample
Curated Collection Information
| Accession | 26026637 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | USA |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 39.78/-100.45 |
| Address | USA |
ECOSYSTEM
| Original Query | Homo sapiens,urine |
|---|---|
| Classification | host_associated,urinary_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | UTI |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
-
Sequence
- Accession: NZ_CP092564.1
- Description: Staphylococcus aureus strain MRSA-WC090 plasmid unnamed, complete sequence
- Source: refseq
- Created at NCBI: March 26, 2022
-
Host Taxonomy
Assigned Host: Staphylococcus aureus (1280)- Superkingdom : Bacteria (2)
- Phylum : Bacillota (1239)
- Class : Bacilli (91061)
- Order : Bacillales (1385)
- Family : Staphylococcaceae (90964)
- Genus : Staphylococcus (1279)
- Species : Staphylococcus_aureus (1280)
- Strain:
-
Biosample
Accession: 26026630 - GEOGRAPHICAL INFORMATION
- Original Query: USA
- Original Query Type: name
- Address: USA
- Coordinates (Lat/Lon): 39.78/-100.45
- ECOSYSTEM
- Original Query: Homo sapiens,Nephrostomy
- Classification: host_associated,kidney,urinary_system
- Host-associated Taxon:
- Homo sapiens (9606)
- DISEASE
- Original Query: UTI
- DOID/SYMP:
- Urinary tract infection (DOID:0080784 ) An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
Visualization
-
Sequence
- Accession: NZ_CP092562.1
- Description: Staphylococcus aureus strain MRSA-WC101 plasmid unnamed, complete sequence
- Source: refseq
- Created at NCBI: March 26, 2022
-
Host Taxonomy
Assigned Host: Staphylococcus aureus (1280)- Superkingdom : Bacteria (2)
- Phylum : Bacillota (1239)
- Class : Bacilli (91061)
- Order : Bacillales (1385)
- Family : Staphylococcaceae (90964)
- Genus : Staphylococcus (1279)
- Species : Staphylococcus_aureus (1280)
- Strain:
-
Biosample
Accession: 26026631 - GEOGRAPHICAL INFORMATION
- Original Query: USA
- Original Query Type: name
- Address: USA
- Coordinates (Lat/Lon): 39.78/-100.45
- ECOSYSTEM
- Original Query: Homo sapiens,urine
- Classification: host_associated,urinary_system
- Host-associated Taxon:
- Homo sapiens (9606)
- DISEASE
- Original Query: UTI
- DOID/SYMP:
- Urinary tract infection (DOID:0080784 ) An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
Visualization
-
Sequence
- Accession: NZ_CP092546.1
- Description: Staphylococcus aureus strain VMRSA-WC102 plasmid unnamed2, complete sequence
- Source: refseq
- Created at NCBI: March 26, 2022
-
Host Taxonomy
Assigned Host: Staphylococcus aureus (1280)- Superkingdom : Bacteria (2)
- Phylum : Bacillota (1239)
- Class : Bacilli (91061)
- Order : Bacillales (1385)
- Family : Staphylococcaceae (90964)
- Genus : Staphylococcus (1279)
- Species : Staphylococcus_aureus (1280)
- Strain:
-
Biosample
Accession: 26026638 - GEOGRAPHICAL INFORMATION
- Original Query: USA
- Original Query Type: name
- Address: USA
- Coordinates (Lat/Lon): 39.78/-100.45
- ECOSYSTEM
- Original Query: Homo sapiens,urine
- Classification: host_associated,urinary_system
- Host-associated Taxon:
- Homo sapiens (9606)
- DISEASE
- Original Query: UTI
- DOID/SYMP:
- Urinary tract infection (DOID:0080784 ) An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
Visualization
-
Sequence
- Accession: NZ_CP092566.1
- Description: Staphylococcus aureus strain MRSA-WC061 plasmid unnamed, complete sequence
- Source: refseq
- Created at NCBI: March 26, 2022
-
Host Taxonomy
Assigned Host: Staphylococcus aureus (1280)- Superkingdom : Bacteria (2)
- Phylum : Bacillota (1239)
- Class : Bacilli (91061)
- Order : Bacillales (1385)
- Family : Staphylococcaceae (90964)
- Genus : Staphylococcus (1279)
- Species : Staphylococcus_aureus (1280)
- Strain:
-
Biosample
Accession: 26026629 - GEOGRAPHICAL INFORMATION
- Original Query: USA
- Original Query Type: name
- Address: USA
- Coordinates (Lat/Lon): 39.78/-100.45
- ECOSYSTEM
- Original Query: Homo sapiens,Nephrostomy
- Classification: host_associated,kidney,urinary_system
- Host-associated Taxon:
- Homo sapiens (9606)
- DISEASE
- Original Query: UTI
- DOID/SYMP:
- Urinary tract infection (DOID:0080784 ) An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
Visualization
-
Sequence
- Accession: NZ_CP092539.1
- Description: Staphylococcus aureus strain VMRSA-WC123 plasmid unnamed, complete sequence
- Source: refseq
- Created at NCBI: March 26, 2022
-
Host Taxonomy
Assigned Host: Staphylococcus aureus (1280)- Superkingdom : Bacteria (2)
- Phylum : Bacillota (1239)
- Class : Bacilli (91061)
- Order : Bacillales (1385)
- Family : Staphylococcaceae (90964)
- Genus : Staphylococcus (1279)
- Species : Staphylococcus_aureus (1280)
- Strain:
-
Biosample
Accession: 26026642 - GEOGRAPHICAL INFORMATION
- Original Query: USA
- Original Query Type: name
- Address: USA
- Coordinates (Lat/Lon): 39.78/-100.45
- ECOSYSTEM
- Original Query: Homo sapiens,urine
- Classification: host_associated,urinary_system
- Host-associated Taxon:
- Homo sapiens (9606)
- DISEASE
- Original Query: UTI
- DOID/SYMP:
- Urinary tract infection (DOID:0080784 ) An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
Visualization
-
Sequence
- Accession: NZ_CP092560.1
- Description: Staphylococcus aureus strain VMRSA-WC052 plasmid unnamed2, complete sequence
- Source: refseq
- Created at NCBI: March 26, 2022
-
Host Taxonomy
Assigned Host: Staphylococcus aureus (1280)- Superkingdom : Bacteria (2)
- Phylum : Bacillota (1239)
- Class : Bacilli (91061)
- Order : Bacillales (1385)
- Family : Staphylococcaceae (90964)
- Genus : Staphylococcus (1279)
- Species : Staphylococcus_aureus (1280)
- Strain:
-
Biosample
Accession: 26026632 - GEOGRAPHICAL INFORMATION
- Original Query: USA
- Original Query Type: name
- Address: USA
- Coordinates (Lat/Lon): 39.78/-100.45
- ECOSYSTEM
- Original Query: Homo sapiens,urine
- Classification: host_associated,urinary_system
- Host-associated Taxon:
- Homo sapiens (9606)
- DISEASE
- Original Query: UTI
- DOID/SYMP:
- Urinary tract infection (DOID:0080784 ) An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
Visualization
-
Sequence
- Accession: NZ_CP092541.1
- Description: Staphylococcus aureus strain VMRSA-WC121 plasmid unnamed, complete sequence
- Source: refseq
- Created at NCBI: March 26, 2022
-
Host Taxonomy
Assigned Host: Staphylococcus aureus (1280)- Superkingdom : Bacteria (2)
- Phylum : Bacillota (1239)
- Class : Bacilli (91061)
- Order : Bacillales (1385)
- Family : Staphylococcaceae (90964)
- Genus : Staphylococcus (1279)
- Species : Staphylococcus_aureus (1280)
- Strain:
-
Biosample
Accession: 26026641 - GEOGRAPHICAL INFORMATION
- Original Query: USA
- Original Query Type: name
- Address: USA
- Coordinates (Lat/Lon): 39.78/-100.45
- ECOSYSTEM
- Original Query: Homo sapiens,urine
- Classification: host_associated,urinary_system
- Host-associated Taxon:
- Homo sapiens (9606)
- DISEASE
- Original Query: UTI
- DOID/SYMP:
- Urinary tract infection (DOID:0080784 ) An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
Visualization
-
Sequence
- Accession: NZ_CP092555.1
- Description: Staphylococcus aureus strain VMRSA-WC071 plasmid unnamed, complete sequence
- Source: refseq
- Created at NCBI: March 26, 2022
-
Host Taxonomy
Assigned Host: Staphylococcus aureus (1280)- Superkingdom : Bacteria (2)
- Phylum : Bacillota (1239)
- Class : Bacilli (91061)
- Order : Bacillales (1385)
- Family : Staphylococcaceae (90964)
- Genus : Staphylococcus (1279)
- Species : Staphylococcus_aureus (1280)
- Strain:
-
Biosample
Accession: 26026634 - GEOGRAPHICAL INFORMATION
- Original Query: USA
- Original Query Type: name
- Address: USA
- Coordinates (Lat/Lon): 39.78/-100.45
- ECOSYSTEM
- Original Query: Homo sapiens,urine
- Classification: host_associated,urinary_system
- Host-associated Taxon:
- Homo sapiens (9606)
- DISEASE
- Original Query: UTI
- DOID/SYMP:
- Urinary tract infection (DOID:0080784 ) An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
Visualization
-
Sequence
- Accession: NZ_CP092557.1
- Description: Staphylococcus aureus strain VMRSA-WC062 plasmid unnamed, complete sequence
- Source: refseq
- Created at NCBI: March 26, 2022
-
Host Taxonomy
Assigned Host: Staphylococcus aureus (1280)- Superkingdom : Bacteria (2)
- Phylum : Bacillota (1239)
- Class : Bacilli (91061)
- Order : Bacillales (1385)
- Family : Staphylococcaceae (90964)
- Genus : Staphylococcus (1279)
- Species : Staphylococcus_aureus (1280)
- Strain:
-
Biosample
Accession: 26026633 - GEOGRAPHICAL INFORMATION
- Original Query: USA
- Original Query Type: name
- Address: USA
- Coordinates (Lat/Lon): 39.78/-100.45
- ECOSYSTEM
- Original Query: Homo sapiens,Nephrostomy
- Classification: host_associated,kidney,urinary_system
- Host-associated Taxon:
- Homo sapiens (9606)
- DISEASE
- Original Query: UTI
- DOID/SYMP:
- Urinary tract infection (DOID:0080784 ) An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
Visualization
-
Sequence
- Accession: NZ_CP092553.1
- Description: Staphylococcus aureus strain VMRSA-WC081 plasmid unnamed, complete sequence
- Source: refseq
- Created at NCBI: March 26, 2022
-
Host Taxonomy
Assigned Host: Staphylococcus aureus (1280)- Superkingdom : Bacteria (2)
- Phylum : Bacillota (1239)
- Class : Bacilli (91061)
- Order : Bacillales (1385)
- Family : Staphylococcaceae (90964)
- Genus : Staphylococcus (1279)
- Species : Staphylococcus_aureus (1280)
- Strain:
-
Biosample
Accession: 26026635 - GEOGRAPHICAL INFORMATION
- Original Query: USA
- Original Query Type: name
- Address: USA
- Coordinates (Lat/Lon): 39.78/-100.45
- ECOSYSTEM
- Original Query: Homo sapiens,urine
- Classification: host_associated,urinary_system
- Host-associated Taxon:
- Homo sapiens (9606)
- DISEASE
- Original Query: UTI
- DOID/SYMP:
- Urinary tract infection (DOID:0080784 ) An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
Visualization
-
Sequence
- Accession: NZ_CP092551.1
- Description: Staphylococcus aureus strain VMRSA-WC082 plasmid unnamed, complete sequence
- Source: refseq
- Created at NCBI: March 26, 2022
-
Host Taxonomy
Assigned Host: Staphylococcus aureus (1280)- Superkingdom : Bacteria (2)
- Phylum : Bacillota (1239)
- Class : Bacilli (91061)
- Order : Bacillales (1385)
- Family : Staphylococcaceae (90964)
- Genus : Staphylococcus (1279)
- Species : Staphylococcus_aureus (1280)
- Strain:
-
Biosample
Accession: 26026636 - GEOGRAPHICAL INFORMATION
- Original Query: USA
- Original Query Type: name
- Address: USA
- Coordinates (Lat/Lon): 39.78/-100.45
- ECOSYSTEM
- Original Query: Homo sapiens,urine
- Classification: host_associated,urinary_system
- Host-associated Taxon:
- Homo sapiens (9606)
- DISEASE
- Original Query: UTI
- DOID/SYMP:
- Urinary tract infection (DOID:0080784 ) An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.
Visualization
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
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Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| rgi | PC1 beta-lactamase (blaZ) | copy | ||
| amrfinderplus | arsB | copy | ||
| amrfinderplus | arsC | copy | ||
| amrfinderplus | blaR1 | copy | ||
| amrfinderplus | blaZ | copy | ||
| amrfinderplus | cadD | copy | ||
| amrfinderplus | blaI | copy | ||
| amrfinderplus | arsR | copy | ||
| PGAG | replication initiator protein A | copy | ||
| PGAG | hypothetical protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 37 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||||
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Biosynthetic Gene Clusters
based on ANTISMASH
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| AB000510.1 | non-mobilizable | AD045 | AM462 | Candidatus Phytoplasma | 0.0 | |||||
| AB011548.2 | rep_cluster_2350 | MOBF | MOB_unknown | mobilizable | AA667 | AI941 | Actinomycetota,Bacillota,Bacteroidota,Pseudomonadota | 0.0 | genus | |
| AB011549.2 | IncFIA,IncFIB | non-mobilizable | AA345 | AI296 | Enterobacterales | 0.0 | order | |||
| AB063523.1 | rep_cluster_1526 | non-mobilizable | AE201 | AN929 | Wigglesworthia | 0.0 | ||||
| AB244976.1 | rep_cluster_1617 | MOBP | MPF_T | MOBQ | conjugative | AC441 | AL633 | Sphingomonadaceae | 0.00940624 | |
| AB576781.2 | IncFII | MOBF | MPF_F | conjugative | AB460 | AK247 | Enterobacterales | 0.0 | family | |
| AB605179.1 | IncFIB,IncFII | MOBF | MPF_F | conjugative | AB460 | AK247 | Enterobacterales | 0.0 | order | |
| ADWM02000138.1 | non-mobilizable | AF844 | AP846 | Neisseria | 0.00058191 | |||||
| ADWN02000004.1 | non-mobilizable | AF844 | AP846 | Neisseria | 0.00058191 | |||||
| AE006471.2 | IncFIB,IncFII | MOBF | MPF_F | conjugative | AB460 | AK247 | Enterobacterales | 0.0 | order | |
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
Showing 1 to 10 of 72,360 entries (filtered from 72,556 total entries)
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BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | AF001314 | MOBQ | 1349 | 1497 | plus | 100 | 100 | 5.980000000000001e-72 | 276 |
| replicon | AP003139 | rep_cluster_2100 | 1 | 984 | plus | 99.593 | 100 | 0 | 1796 |
| replicon | 000261__GQ900456 | rep_cluster_1017 | 1115 | 1285 | plus | 93.605 | 91 | 1.04e-65 | 255 |
| replicon | AP003139 | rep_cluster_2214 | 21337 | 22197 | plus | 99.884 | 100 | 0 | 1585 |
| replicon | CP000737 | rep_cluster_1733 | 23485 | 24228 | minus | 100 | 100 | 0 | 1375 |
| relaxase | AB304512_00007 | MOBV | 19764 | 20138 | plus | 99.2 | 100 | 1.03e-73 | 244 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 6 of 6 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |