Plasmid NZ_CP092539.1

Sequence

Nucleotide Information

Accession NZ_CP092539.1
Description Staphylococcus aureus strain VMRSA-WC123 plasmid unnamed, complete sequence
Source refseq
Topology circular
Length 24653 bp
GC Content 0.29 %
Created at NCBI March 26, 2022



Assembly

Genome Data Information

Accession GCF_022693165.1
Assembly Coverage 242


Biosample

Curated Collection Information
Accession 26026642

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query UTI
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_AP024171.1 See Comparison
CP049555.1 See Comparison
CP049546.1 See Comparison
CP049408.1 See Comparison
NZ_CP032822.1 See Comparison
NZ_CP099503.1 See Comparison
NZ_CP099496.1 See Comparison
NZ_CP062453.1 See Comparison
NZ_CP092543.1 See Comparison
NZ_CP092568.1 See Comparison
NZ_CP092553.1 See Comparison
NZ_CP092541.1 See Comparison
NZ_CP092566.1 See Comparison
NZ_CP092551.1 See Comparison
NZ_CP092564.1 See Comparison
NZ_CP092549.1 See Comparison
NZ_CP092562.1 See Comparison
NZ_CP092582.1 See Comparison
NZ_CP092555.1 See Comparison
NZ_CP092560.1 See Comparison
NZ_CP092546.1 See Comparison
NZ_CP092557.1 See Comparison
NZ_CP062319.1 See Comparison
NZ_CP091413.1 See Comparison
NZ_CP062392.1 See Comparison
NZ_CP080549.1 See Comparison
NZ_AP024204.1 See Comparison
NZ_CP080567.1 See Comparison
NZ_CP013956.1 See Comparison
NC_013292.1 See Comparison
NC_021552.1 See Comparison
NZ_CP029199.1 See Comparison
CP030461.1 See Comparison
NZ_CP029079.1 See Comparison
CP127782.1 See Comparison
NC_003140.1 See Comparison
NZ_CP134802.1 See Comparison
CP127760.1 See Comparison
CP127706.1 See Comparison
CP127604.1 See Comparison
CP155453.1 See Comparison
NZ_CP109935.1 See Comparison
NZ_CP150755.1 See Comparison
NZ_CP150753.1 See Comparison
CP152128.1 See Comparison
CP151582.1 See Comparison
NZ_CP131666.1 See Comparison
CP049408.1 See Comparison
NZ_CP151114.1 See Comparison
CP150136.1 See Comparison
NZ_AP024171.1 See Comparison
CP049555.1 See Comparison
CP049546.1 See Comparison
NZ_CP062453.1 See Comparison
NZ_CP099503.1 See Comparison
NZ_CP099496.1 See Comparison
NZ_CP032822.1 See Comparison
NZ_CP092543.1 See Comparison
NZ_CP092557.1 See Comparison
NZ_CP092568.1 See Comparison
NZ_CP092553.1 See Comparison
NZ_CP092541.1 See Comparison
NZ_CP092566.1 See Comparison
NZ_CP092551.1 See Comparison
NZ_CP092564.1 See Comparison
NZ_CP092539.1 See Comparison
NZ_CP092549.1 See Comparison
NZ_CP092562.1 See Comparison
NZ_CP092582.1 See Comparison
NZ_CP092555.1 See Comparison
NZ_CP092560.1 See Comparison
NZ_CP092546.1 See Comparison
NZ_AP024204.1 See Comparison
NZ_CP062392.1 See Comparison
NZ_CP062319.1 See Comparison
NZ_CP091413.1 See Comparison
NZ_CP029079.1 See Comparison
NZ_CP080549.1 See Comparison
NZ_CP080567.1 See Comparison
NC_021552.1 See Comparison
NZ_CP013956.1 See Comparison
NC_013292.1 See Comparison
CP030461.1 See Comparison
NZ_CP029199.1 See Comparison
CP127782.1 See Comparison
NC_003140.1 See Comparison
NZ_CP134802.1 See Comparison
NZ_CP109935.1 See Comparison
CP127604.1 See Comparison
CP127760.1 See Comparison
CP127706.1 See Comparison
NZ_CP131666.1 See Comparison
CP155453.1 See Comparison
CP151582.1 See Comparison
NZ_CP150755.1 See Comparison
NZ_CP150753.1 See Comparison
CP152128.1 See Comparison
NZ_CP151114.1 See Comparison
CP049408.1 See Comparison
CP150136.1 See Comparison
NZ_AP024171.1 See Comparison
CP049555.1 See Comparison
CP049546.1 See Comparison
NZ_CP062392.1 See Comparison
NZ_CP099503.1 See Comparison
NZ_CP099496.1 See Comparison
NZ_CP062453.1 See Comparison
NZ_CP092543.1 See Comparison
NZ_CP092557.1 See Comparison
NZ_CP092568.1 See Comparison
NZ_CP092553.1 See Comparison
NZ_CP092541.1 See Comparison
NZ_CP092566.1 See Comparison
NZ_CP092551.1 See Comparison
NZ_CP092564.1 See Comparison
NZ_CP092549.1 See Comparison
NZ_CP092562.1 See Comparison
NZ_CP092582.1 See Comparison
NZ_CP092555.1 See Comparison
NZ_CP092560.1 See Comparison
NZ_CP092546.1 See Comparison
NZ_CP032822.1 See Comparison
NZ_CP062319.1 See Comparison
NZ_CP013956.1 See Comparison
NZ_CP091413.1 See Comparison
NZ_AP024204.1 See Comparison
NZ_CP080549.1 See Comparison
NZ_CP080567.1 See Comparison
NC_021552.1 See Comparison
NC_013292.1 See Comparison
CP127782.1 See Comparison
NZ_CP029079.1 See Comparison
CP127604.1 See Comparison
CP030461.1 See Comparison
NZ_CP029199.1 See Comparison
NC_003140.1 See Comparison
NZ_CP134802.1 See Comparison
CP127760.1 See Comparison
NZ_CP109935.1 See Comparison
CP127706.1 See Comparison
NZ_CP131666.1 See Comparison
NZ_CP150755.1 See Comparison
NZ_CP150753.1 See Comparison
CP152128.1 See Comparison
NZ_CP151114.1 See Comparison
CP155453.1 See Comparison
CP151582.1 See Comparison
CP049555.1 See Comparison
NZ_AP024171.1 See Comparison
CP150136.1 See Comparison
CP049546.1 See Comparison
NZ_CP032822.1 See Comparison
CP049408.1 See Comparison
NZ_CP091413.1 See Comparison
NZ_CP099503.1 See Comparison
NZ_CP099496.1 See Comparison
NZ_CP062392.1 See Comparison
NZ_CP062319.1 See Comparison
NZ_AP024204.1 See Comparison
NZ_CP062453.1 See Comparison
NZ_CP092543.1 See Comparison
NZ_CP092557.1 See Comparison
NZ_CP092568.1 See Comparison
NZ_CP092553.1 See Comparison
NZ_CP092541.1 See Comparison
NZ_CP092566.1 See Comparison
NZ_CP092551.1 See Comparison
NZ_CP092564.1 See Comparison
NZ_CP092549.1 See Comparison
NZ_CP092562.1 See Comparison
NZ_CP092582.1 See Comparison
NZ_CP092555.1 See Comparison
NZ_CP092560.1 See Comparison
NZ_CP092546.1 See Comparison
NZ_CP013956.1 See Comparison
NZ_CP080549.1 See Comparison
NZ_CP080567.1 See Comparison
CP030461.1 See Comparison
NC_021552.1 See Comparison
NC_013292.1 See Comparison
NC_003140.1 See Comparison
NZ_CP029079.1 See Comparison
NZ_CP029199.1 See Comparison
NZ_CP134802.1 See Comparison
NZ_CP150755.1 See Comparison
CP127604.1 See Comparison
CP127782.1 See Comparison
CP127760.1 See Comparison
CP127706.1 See Comparison
NZ_CP109935.1 See Comparison
CP155453.1 See Comparison
NZ_CP150753.1 See Comparison
CP152128.1 See Comparison
CP151582.1 See Comparison
NZ_CP131666.1 See Comparison
NZ_AP024171.1 See Comparison
NZ_CP151114.1 See Comparison
CP150136.1 See Comparison
CP049555.1 See Comparison
CP049546.1 See Comparison
NZ_CP032822.1 See Comparison
CP049408.1 See Comparison
NZ_CP062392.1 See Comparison
NZ_CP099503.1 See Comparison
NZ_CP099496.1 See Comparison
NZ_CP062453.1 See Comparison
NZ_CP092543.1 See Comparison
NZ_CP092557.1 See Comparison
NZ_CP092568.1 See Comparison
NZ_CP092553.1 See Comparison
NZ_CP092541.1 See Comparison
NZ_CP092566.1 See Comparison
NZ_CP092551.1 See Comparison
NZ_CP092564.1 See Comparison
NZ_CP092549.1 See Comparison
NZ_CP092562.1 See Comparison
NZ_CP092582.1 See Comparison
NZ_CP092555.1 See Comparison
NZ_CP092560.1 See Comparison
NZ_CP092546.1 See Comparison
NZ_CP062319.1 See Comparison
NZ_CP091413.1 See Comparison
NZ_AP024204.1 See Comparison
NZ_CP080549.1 See Comparison
NZ_CP080567.1 See Comparison
NZ_CP013956.1 See Comparison
NZ_CP029199.1 See Comparison
NC_013292.1 See Comparison
NC_021552.1 See Comparison
CP030461.1 See Comparison
NC_003140.1 See Comparison
NZ_CP029079.1 See Comparison
NZ_CP134802.1 See Comparison
CP127782.1 See Comparison
CP127604.1 See Comparison
CP127760.1 See Comparison
CP127706.1 See Comparison
CP155453.1 See Comparison
NZ_CP109935.1 See Comparison
NZ_CP150755.1 See Comparison
NZ_CP150753.1 See Comparison
NZ_CP131666.1 See Comparison
CP152128.1 See Comparison
NZ_CP151114.1 See Comparison
CP151582.1 See Comparison
CP150136.1 See Comparison
NZ_AP024171.1 See Comparison
CP049555.1 See Comparison
CP049546.1 See Comparison
NZ_CP032822.1 See Comparison
CP049408.1 See Comparison
NZ_CP099503.1 See Comparison
NZ_CP099496.1 See Comparison
NZ_CP062392.1 See Comparison
NZ_CP062453.1 See Comparison
NZ_CP092543.1 See Comparison
NZ_CP092557.1 See Comparison
NZ_CP092568.1 See Comparison
NZ_CP092553.1 See Comparison
NZ_CP092541.1 See Comparison
NZ_CP092566.1 See Comparison
NZ_CP092551.1 See Comparison
NZ_CP092564.1 See Comparison
NZ_CP092549.1 See Comparison
NZ_CP092562.1 See Comparison
NZ_CP092582.1 See Comparison
NZ_CP092555.1 See Comparison
NZ_CP092560.1 See Comparison
NZ_CP092546.1 See Comparison
NC_013292.1 See Comparison
NZ_CP080549.1 See Comparison
NZ_CP080567.1 See Comparison
NZ_CP013956.1 See Comparison
NZ_CP062319.1 See Comparison
NZ_CP091413.1 See Comparison
NZ_AP024204.1 See Comparison
NZ_CP029079.1 See Comparison
NC_021552.1 See Comparison
CP030461.1 See Comparison
NZ_CP029199.1 See Comparison
NZ_CP150755.1 See Comparison
NC_003140.1 See Comparison
NZ_CP134802.1 See Comparison
NZ_CP109935.1 See Comparison
CP127782.1 See Comparison
CP127760.1 See Comparison
CP127706.1 See Comparison
CP127604.1 See Comparison
NZ_CP150753.1 See Comparison
CP152128.1 See Comparison
CP155453.1 See Comparison
NZ_CP151114.1 See Comparison
CP151582.1 See Comparison
NZ_AP024171.1 See Comparison
CP150136.1 See Comparison
NZ_CP131666.1 See Comparison
CP049546.1 See Comparison
NZ_CP062453.1 See Comparison
CP049408.1 See Comparison
CP049555.1 See Comparison
NZ_CP032822.1 See Comparison
NZ_CP099503.1 See Comparison
NZ_CP099496.1 See Comparison
NZ_CP092543.1 See Comparison
NZ_CP092557.1 See Comparison
NZ_CP092568.1 See Comparison
NZ_CP092553.1 See Comparison
NZ_CP092541.1 See Comparison
NZ_CP092566.1 See Comparison
NZ_CP092551.1 See Comparison
NZ_CP092564.1 See Comparison
NZ_CP092549.1 See Comparison
NZ_CP092562.1 See Comparison
NZ_CP092582.1 See Comparison
NZ_CP092555.1 See Comparison
NZ_CP092560.1 See Comparison
NZ_CP092546.1 See Comparison
NZ_CP062392.1 See Comparison
NZ_CP062319.1 See Comparison
NZ_CP080549.1 See Comparison
NZ_CP091413.1 See Comparison
NZ_AP024204.1 See Comparison
NZ_CP080567.1 See Comparison
NZ_CP029199.1 See Comparison
NZ_CP013956.1 See Comparison
NC_013292.1 See Comparison
CP030461.1 See Comparison
NC_021552.1 See Comparison
NZ_CP029079.1 See Comparison
CP155453.1 See Comparison
NC_003140.1 See Comparison
CP127604.1 See Comparison
NZ_CP134802.1 See Comparison
CP127782.1 See Comparison
CP127760.1 See Comparison
CP127706.1 See Comparison
NZ_CP109935.1 See Comparison
NZ_CP150755.1 See Comparison
NZ_CP150753.1 See Comparison
CP152128.1 See Comparison
CP150136.1 See Comparison
NZ_CP131666.1 See Comparison
NZ_CP151114.1 See Comparison
CP151582.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2