Plasmid NZ_CP092518.1

Sequence

Nucleotide Information

Accession NZ_CP092518.1
Description Klebsiella quasipneumoniae strain EF262 plasmid p6, complete sequence
Source refseq
Topology circular
Length 4655 bp
GC Content 0.43 %
Created at NCBI June 29, 2022



Assembly

Genome Data Information

Accession GCF_023920245.1
Assembly Coverage 53


Biosample

Curated Collection Information
Accession 26096228

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 4.9239N;1.7446W
Original Query Type coordinates
Coordinates (Lat/Lon) 4.92/-1.74
Address Effia Nkwanta Regional Hospital, STMA Road, Assakae, Sekondi-Takoradi, Sekondi Takoradi Metropolitan District, Western Region, WS-189-9360, Ghana

ECOSYSTEM
Original Query Homo sapiens,HVS
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query UTI
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore