Plasmid NZ_CP092514.1
Sequence
Nucleotide Information
| Accession | NZ_CP092514.1 |
|---|---|
| Description | Klebsiella quasipneumoniae strain EF262 plasmid p2, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 68175 bp |
| GC Content | 0.51 % |
| Created at NCBI | June 29, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella quasipneumoniae (1463165) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_quasipneumoniae (1463165) |
| Strain |
Biosample
Curated Collection Information
| Accession | 26096228 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 4.9239N;1.7446W |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 4.92/-1.74 |
| Address | Effia Nkwanta Regional Hospital, STMA Road, Assakae, Sekondi-Takoradi, Sekondi Takoradi Metropolitan District, Western Region, WS-189-9360, Ghana |
ECOSYSTEM
| Original Query | Homo sapiens,HVS |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | UTI |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | ltrA | copy | ||
| PGAG | DUF262 domain-containing protein | copy | ||
| PGAG | DUF262 domain-containing protein | copy | ||
| PGAG | DUF4011 domain-containing anti-phage protein Hhe | copy | ||
| PGAG | IS110-like element IS4321 family transposase | copy | ||
| PGAG | Tn3-like element ISPa38 family transposase | copy | ||
| PGAG | nucleotidyltransferase | copy | ||
| PGAG | DUF86 domain-containing protein | copy | ||
| PGAG | cupin domain-containing protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 61 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | NZ_CP013834 | MOBF | 60896 | 61152 | minus | 85.878 | 100 | 1.4800000000000002e-70 | 272 |
| replicon | 000204__CP008701_00115 | IncR | 42476 | 43370 | plus | 98.772 | 100 | 0 | 1591 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |