Plasmid NZ_CP089409.1

Sequence

Nucleotide Information

Accession NZ_CP089409.1
Description Klebsiella michiganensis strain Kox101 plasmid pKOX101_2, complete sequence
Source refseq
Topology circular
Length 87731 bp
GC Content 0.53 %
Created at NCBI Dec. 20, 2021



Assembly

Genome Data Information

Accession GCF_021228755.1
Assembly Coverage 17


Biosample

Curated Collection Information
Accession 23286126

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.8136S;144.9631E
Original Query Type coordinates
Coordinates (Lat/Lon) -37.81/144.96
Address 260, Elizabeth Street, East End Theatre District, Melbourne, City of Melbourne, Victoria, 3000, Australia

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query urinary tract infection
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP089405.1 See Comparison
NC_019368.1 See Comparison
NZ_CP042542.1 See Comparison
NZ_CP042574.1 See Comparison
NZ_CP042522.1 See Comparison
NZ_CP042532.1 See Comparison
NZ_CP042568.1 See Comparison
NZ_CP042514.1 See Comparison
NZ_CP042537.1 See Comparison
NC_019368.1 See Comparison
NZ_CP089405.1 See Comparison
NZ_CP042526.1 See Comparison
NZ_CP042542.1 See Comparison
NZ_CP042542.1 See Comparison
NZ_CP042574.1 See Comparison
NZ_CP042522.1 See Comparison
NZ_CP042532.1 See Comparison
NZ_CP042568.1 See Comparison
NZ_CP042514.1 See Comparison
NZ_CP042526.1 See Comparison
NZ_CP089405.1 See Comparison
NC_019368.1 See Comparison
NZ_CP042537.1 See Comparison
NZ_CP042574.1 See Comparison
NZ_CP042522.1 See Comparison
NZ_CP042532.1 See Comparison
NZ_CP042568.1 See Comparison
NZ_CP042514.1 See Comparison
NZ_CP042537.1 See Comparison
NZ_CP042526.1 See Comparison
NZ_CP042532.1 See Comparison
NZ_CP042568.1 See Comparison
NZ_CP042514.1 See Comparison
NZ_CP042526.1 See Comparison
NZ_CP089405.1 See Comparison
NC_019368.1 See Comparison
NZ_CP042542.1 See Comparison
NZ_CP042574.1 See Comparison
NZ_CP042522.1 See Comparison
NZ_CP042537.1 See Comparison
NZ_CP089409.1 See Comparison
NZ_CP089405.1 See Comparison
NZ_CP042514.1 See Comparison
NC_019368.1 See Comparison
NZ_CP042537.1 See Comparison
NZ_CP042542.1 See Comparison
NZ_CP042574.1 See Comparison
NZ_CP042522.1 See Comparison
NZ_CP042532.1 See Comparison
NZ_CP042568.1 See Comparison
NZ_CP042526.1 See Comparison
NC_019368.1 See Comparison
NZ_CP089405.1 See Comparison
NZ_CP042542.1 See Comparison
NZ_CP042514.1 See Comparison
NZ_CP042574.1 See Comparison
NZ_CP042522.1 See Comparison
NZ_CP042532.1 See Comparison
NZ_CP042568.1 See Comparison
NZ_CP042542.1 See Comparison
NZ_CP042537.1 See Comparison
NC_019368.1 See Comparison
NZ_CP042526.1 See Comparison
NZ_CP089405.1 See Comparison
NZ_CP042574.1 See Comparison
NZ_CP042522.1 See Comparison
NZ_CP042532.1 See Comparison
NZ_CP042568.1 See Comparison
NZ_CP042514.1 See Comparison
NZ_CP042537.1 See Comparison
NZ_CP042526.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2