Plasmid NZ_CP042514.1
Sequence
Nucleotide Information
| Accession | NZ_CP042514.1 |
|---|---|
| Description | Serratia marcescens strain E28 plasmid pE28_002, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 87731 bp |
| GC Content | 0.53 % |
| Created at NCBI | Oct. 13, 2019 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Serratia marcescens (615) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Yersiniaceae (1903411) |
| Genus | Serratia (613) |
| Species | Serratia_marcescens (615) |
| Strain |
Biosample
Curated Collection Information
| Accession | 12289419 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Australia,Sydney |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | -33.85/151.22 |
| Address | Australia,Sydney |
ECOSYSTEM
| Original Query | Whole organism,Ensuite 7/8 |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | qacEdelta1 | copy | ||
| amrfinderplus | qnrB2 | copy | ||
| amrfinderplus | qacG2 | copy | ||
| amrfinderplus | mph(A) | copy | ||
| amrfinderplus | sul1 | copy | ||
| amrfinderplus | sul1 | copy | ||
| amrfinderplus | blaIMP-4 | copy | ||
| amrfinderplus | aac(6')-Ib4 | copy | ||
| amrfinderplus | aac(3)-IId | copy | ||
| amrfinderplus | catB3 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 129 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | AF550415 | IncL/M | 87137 | 87731 | plus | 100 | 100 | 0 | 1099 |
| relaxase | NC_004464_00056 | MOBP | 64835 | 66811 | plus | 100 | 100 | 0 | 1380 |
| mate-pair-formation | NC_004464_00105 | MPF_I | 30549 | 32633 | minus | 100 | 100 | 0 | 1415 |
| mate-pair-formation | NC_005246_00057 | MPF_I | 67367 | 68101 | plus | 99.184 | 95 | 6.500000000000001e-162 | 503 |
| mate-pair-formation | NC_019063_00094 | MPF_I | 72776 | 73285 | plus | 99.412 | 100 | 1.74e-108 | 346 |
| mate-pair-formation | NC_019344_00078 | MPF_I | 73951 | 74661 | plus | 99.578 | 100 | 4.9900000000000004e-130 | 411 |
| mate-pair-formation | NC_004464_00066 | MPF_I | 74673 | 75821 | plus | 100 | 100 | 0 | 647 |
| mate-pair-formation | NC_004464_00068 | MPF_I | 77197 | 77898 | plus | 100 | 100 | 4.11e-137 | 431 |
| mate-pair-formation | NC_019154_00069 | MPF_I | 77925 | 78452 | plus | 99.432 | 100 | 7.62e-100 | 321 |
| mate-pair-formation | NC_005246_00069 | MPF_I | 78472 | 78858 | plus | 93.798 | 100 | 2.82e-61 | 209 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 11 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |