Plasmid NZ_CP086508.1

Sequence

Nucleotide Information

Accession NZ_CP086508.1
Description Escherichia coli strain Ec-050-T5-MAC plasmid pEc-050-T5-MAC_8, complete sequence
Source refseq
Topology circular
Length 4773 bp
GC Content 0.53 %
Created at NCBI March 31, 2022



Assembly

Genome Data Information

Accession GCF_022759725.1
Assembly Coverage 275


Biosample

Curated Collection Information
Accession 22108722

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Switzerland
Original Query Type name
Coordinates (Lat/Lon) 46.80/8.23
Address Switzerland

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP125062.1 See Comparison
CP124983.1 See Comparison
CP054340.1 See Comparison
NZ_MG649064.1 See Comparison
CP082493.1 See Comparison
NZ_CP103526.1 See Comparison
NZ_CP086478.1 See Comparison
NZ_CP086488.1 See Comparison
NZ_CP086498.1 See Comparison
NZ_CP086518.1 See Comparison
NZ_CP093925.1 See Comparison
CP125062.1 See Comparison
CP082493.1 See Comparison
CP054340.1 See Comparison
NZ_CP086488.1 See Comparison
NZ_CP086498.1 See Comparison
NZ_CP086518.1 See Comparison
NZ_CP093925.1 See Comparison
CP124983.1 See Comparison
NZ_MG649064.1 See Comparison
NZ_CP103526.1 See Comparison
NZ_CP086478.1 See Comparison
CP054340.1 See Comparison
CP125062.1 See Comparison
CP124983.1 See Comparison
NZ_MG649064.1 See Comparison
NZ_CP086498.1 See Comparison
NZ_CP103526.1 See Comparison
NZ_CP086518.1 See Comparison
NZ_CP093925.1 See Comparison
NZ_CP086478.1 See Comparison
CP125062.1 See Comparison
NZ_CP086488.1 See Comparison
CP082493.1 See Comparison
CP124983.1 See Comparison
CP082493.1 See Comparison
NZ_CP086478.1 See Comparison
NZ_CP086488.1 See Comparison
NZ_CP086498.1 See Comparison
NZ_CP086508.1 See Comparison
NZ_CP086518.1 See Comparison
NZ_CP093925.1 See Comparison
CP054340.1 See Comparison
NZ_MG649064.1 See Comparison
NZ_CP103526.1 See Comparison
CP125062.1 See Comparison
NZ_MG649064.1 See Comparison
NZ_CP086478.1 See Comparison
NZ_CP086488.1 See Comparison
NZ_CP086498.1 See Comparison
NZ_CP086518.1 See Comparison
NZ_CP093925.1 See Comparison
CP125062.1 See Comparison
CP124983.1 See Comparison
CP054340.1 See Comparison
NZ_CP103526.1 See Comparison
CP082493.1 See Comparison
CP124983.1 See Comparison
NZ_CP086478.1 See Comparison
CP054340.1 See Comparison
NZ_MG649064.1 See Comparison
NZ_CP103526.1 See Comparison
NZ_CP086488.1 See Comparison
NZ_CP086498.1 See Comparison
NZ_CP086518.1 See Comparison
NZ_CP093925.1 See Comparison
CP082493.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore