Plasmid NZ_CP086504.1
Sequence
Nucleotide Information
| Accession | NZ_CP086504.1 |
|---|---|
| Description | Escherichia coli strain Ec-050-T5-MAC plasmid pEc-050-T5-MAC_4, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 66616 bp |
| GC Content | 0.51 % |
| Created at NCBI | March 31, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 22108722 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Switzerland |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 46.80/8.23 |
| Address | Switzerland |
ECOSYSTEM
| Original Query | Homo sapiens,stool |
|---|---|
| Classification | fecal,gastrointestinal_system,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaCMY-2 | copy | ||
| amrfinderplus | erm(B) | copy | ||
| rgi | ErmB | copy | ||
| PGAG | repA | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | CPBP family intramembrane glutamic endopeptidase | copy | ||
| PGAG | pemI | copy | ||
| PGAG | pemK-mt | copy | ||
| PGAG | IS6-like element IS26 family transposase | copy | ||
| PGAG | 23S rRNA methyltransferase attenuation leader peptide | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 96 entries
…
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||||
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | MK878891_00042 | IncFIA | 31 | 858 | plus | 99.517 | 97 | 0 | 1507 |
| replicon | AY458016 | IncFIC | 66359 | 66616 | minus | 100 | 99 | 2.94e-132 | 477 |
| relaxase | NC_017627_00068 | MOBF | 56270 | 61537 | plus | 97.096 | 100 | 0 | 3343 |
| mate-pair-formation | NC_022651_00077 | MPF_F | 31143 | 31451 | plus | 99.029 | 99 | 4.79e-63 | 212 |
| mate-pair-formation | NC_010409_00124 | MPF_F | 32029 | 32754 | plus | 97.934 | 100 | 6.52e-155 | 483 |
| mate-pair-formation | NC_019094_00090 | MPF_F | 32757 | 34166 | plus | 96.815 | 97 | 0 | 857 |
| mate-pair-formation | NC_017639_00094 | MPF_F | 35068 | 35580 | plus | 98.246 | 100 | 5.42e-98 | 316 |
| mate-pair-formation | NC_013437_00116 | MPF_T | 37216 | 39831 | plus | 91.514 | 99 | 0 | 1648 |
| mate-pair-formation | NC_007675_00027 | MPF_F | 40217 | 40846 | plus | 99.048 | 97 | 3.79e-135 | 424 |
| mate-pair-formation | NC_017639_00100 | MPF_F | 40846 | 41802 | plus | 98.746 | 100 | 0 | 605 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 15 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |