Plasmid NZ_CP085189.1

Sequence

Nucleotide Information

Accession NZ_CP085189.1
Description Escherichia coli strain EC195 plasmid pEC195-253k, complete sequence
Source refseq
Topology circular
Length 253380 bp
GC Content 0.47 %
Created at NCBI Oct. 28, 2021



Assembly

Genome Data Information

Accession GCF_020616495.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 22242657

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Wenzhou
Original Query Type name
Coordinates (Lat/Lon) 28.02/120.66
Address China,Wenzhou

ECOSYSTEM
Original Query Homo sapiens,cell culture
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP024143.1 See Comparison
NZ_ON960349.1 See Comparison
NZ_CP047877.1 See Comparison
NZ_CP047666.1 See Comparison
NZ_CP047659.1 See Comparison
NZ_MK477611.1 See Comparison
NZ_ON960347.1 See Comparison
NZ_ON960348.1 See Comparison
NZ_CP047877.1 See Comparison
NZ_CP024143.1 See Comparison
NZ_CP101389.1 See Comparison
NZ_MK477611.1 See Comparison
NZ_CP047666.1 See Comparison
NZ_CP047659.1 See Comparison
NZ_ON960349.1 See Comparison
NZ_ON960347.1 See Comparison
NZ_ON960348.1 See Comparison
NZ_CP024143.1 See Comparison
NZ_CP101389.1 See Comparison
NZ_CP047877.1 See Comparison
NZ_MK477611.1 See Comparison
NZ_CP047666.1 See Comparison
NZ_CP047659.1 See Comparison
NZ_CP101389.1 See Comparison
NZ_ON960349.1 See Comparison
NZ_ON960347.1 See Comparison
NZ_ON960348.1 See Comparison
NZ_CP024143.1 See Comparison
NZ_CP047666.1 See Comparison
NZ_MK477611.1 See Comparison
NZ_CP047659.1 See Comparison
NZ_ON960349.1 See Comparison
NZ_CP047877.1 See Comparison
NZ_ON960347.1 See Comparison
NZ_ON960348.1 See Comparison
NZ_CP024143.1 See Comparison
NZ_CP101389.1 See Comparison
NZ_MK477611.1 See Comparison
NZ_CP101389.1 See Comparison
NZ_ON960349.1 See Comparison
NZ_ON960347.1 See Comparison
NZ_ON960348.1 See Comparison
NZ_CP047877.1 See Comparison
NZ_CP047666.1 See Comparison
NZ_CP047659.1 See Comparison
NZ_MK477611.1 See Comparison
NZ_CP085189.1 See Comparison
NZ_CP024143.1 See Comparison
NZ_ON960349.1 See Comparison
NZ_CP047877.1 See Comparison
NZ_CP047666.1 See Comparison
NZ_CP047659.1 See Comparison
NZ_ON960347.1 See Comparison
NZ_ON960348.1 See Comparison
NZ_CP101389.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore