Plasmid NZ_CP047666.1

Sequence

Nucleotide Information

Accession NZ_CP047666.1
Description Escherichia coli strain LD26-1 plasmid pLD26-1-MCR1, complete sequence
Source refseq
Topology circular
Length 251000 bp
GC Content 0.47 %
Created at NCBI Jan. 23, 2020



Assembly

Genome Data Information

Accession GCF_009909485.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 13829575

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 32.56N;120.42E
Original Query Type coordinates
Coordinates (Lat/Lon) 32.56/120.42
Address S221, 北城街道, Hai'an, Nantong, Jiangsu, 226600, China

ECOSYSTEM
Original Query feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP085189.1 See Comparison
NZ_CP042587.1 See Comparison
NZ_CP024143.1 See Comparison
NZ_ON960349.1 See Comparison
NZ_CP047877.1 See Comparison
NZ_CP047666.1 See Comparison
NZ_CP047659.1 See Comparison
NZ_MK477611.1 See Comparison
NZ_KY990887.1 See Comparison
NZ_ON960347.1 See Comparison
NZ_ON960348.1 See Comparison
NZ_CP042587.1 See Comparison
NZ_CP101389.1 See Comparison
NZ_CP085189.1 See Comparison
NZ_ON960349.1 See Comparison
NZ_CP024143.1 See Comparison
NZ_CP047877.1 See Comparison
NZ_CP047659.1 See Comparison
NZ_MK477611.1 See Comparison
NZ_KY990887.1 See Comparison
NZ_ON960347.1 See Comparison
NZ_ON960348.1 See Comparison
NZ_CP101389.1 See Comparison
NZ_KY990887.1 See Comparison
NZ_CP042587.1 See Comparison
NZ_CP024143.1 See Comparison
NZ_MK477611.1 See Comparison
NZ_CP085189.1 See Comparison
NZ_ON960349.1 See Comparison
NZ_CP047877.1 See Comparison
NZ_CP047659.1 See Comparison
NZ_ON960347.1 See Comparison
NZ_ON960348.1 See Comparison
NZ_MK477611.1 See Comparison
NZ_CP085189.1 See Comparison
NZ_CP042587.1 See Comparison
NZ_CP101389.1 See Comparison
NZ_CP024143.1 See Comparison
NZ_KY990887.1 See Comparison
NZ_CP085189.1 See Comparison
NZ_ON960349.1 See Comparison
NZ_ON960347.1 See Comparison
NZ_ON960348.1 See Comparison
NZ_CP101389.1 See Comparison
NZ_CP047877.1 See Comparison
NZ_CP047659.1 See Comparison
NZ_MK477611.1 See Comparison
NZ_CP042587.1 See Comparison
NZ_CP024143.1 See Comparison
NZ_CP047877.1 See Comparison
NZ_KY990887.1 See Comparison
NZ_CP047659.1 See Comparison
NZ_CP085189.1 See Comparison
NZ_CP101389.1 See Comparison
NZ_ON960349.1 See Comparison
NZ_ON960347.1 See Comparison
NZ_ON960348.1 See Comparison
NZ_CP047877.1 See Comparison
NZ_CP042587.1 See Comparison
NZ_MK477611.1 See Comparison
NZ_CP024143.1 See Comparison
NZ_KY990887.1 See Comparison
NZ_CP047659.1 See Comparison
NZ_ON960349.1 See Comparison
NZ_ON960347.1 See Comparison
NZ_ON960348.1 See Comparison
NZ_CP101389.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore