Plasmid NZ_CP082128.1

Sequence

Nucleotide Information

Accession NZ_CP082128.1
Description Escherichia coli strain NDM_12_14482 plasmid pIncFIA, complete sequence
Source refseq
Topology circular
Length 136961 bp
GC Content 0.53 %
Created at NCBI Sept. 2, 2021



Assembly

Genome Data Information

Accession GCF_019844015.1
Assembly Coverage 49.9


Biosample

Curated Collection Information
Accession 20857176

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 6.7924S;39.2083E
Original Query Type coordinates
Coordinates (Lat/Lon) -6.79/39.21
Address Morogoro Road, Kibo, Ubungo, Ubungo Municipal, Dar es-Salaam, Coastal Zone, 21493, Tanzania

ECOSYSTEM
Original Query Homo sapiens,rectal swab from neonate
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Gut colonization
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_AP018833.1 See Comparison
NZ_CP048368.1 See Comparison
LC744516.1 See Comparison
LC744483.1 See Comparison
LC744468.1 See Comparison
LC744462.1 See Comparison
LC744461.1 See Comparison
LC744457.1 See Comparison
LC744456.1 See Comparison
LC744455.1 See Comparison
LC744452.1 See Comparison
LC744450.1 See Comparison
LC744444.1 See Comparison
NZ_CP103530.1 See Comparison
NZ_CP133454.1 See Comparison
NZ_CP060868.1 See Comparison
NZ_CP082130.1 See Comparison
NZ_CP103530.1 See Comparison
NZ_AP018833.1 See Comparison
NZ_CP048368.1 See Comparison
LC744516.1 See Comparison
LC744483.1 See Comparison
LC744468.1 See Comparison
LC744462.1 See Comparison
LC744461.1 See Comparison
LC744457.1 See Comparison
LC744456.1 See Comparison
LC744455.1 See Comparison
LC744452.1 See Comparison
LC744450.1 See Comparison
LC744444.1 See Comparison
NZ_CP082130.1 See Comparison
NZ_CP060868.1 See Comparison
NZ_CP133454.1 See Comparison
NZ_CP060868.1 See Comparison
NZ_AP018833.1 See Comparison
NZ_CP048368.1 See Comparison
LC744516.1 See Comparison
LC744483.1 See Comparison
LC744468.1 See Comparison
LC744462.1 See Comparison
LC744461.1 See Comparison
LC744457.1 See Comparison
LC744456.1 See Comparison
LC744455.1 See Comparison
LC744452.1 See Comparison
LC744450.1 See Comparison
LC744444.1 See Comparison
NZ_CP103530.1 See Comparison
NZ_AP018833.1 See Comparison
NZ_CP082130.1 See Comparison
NZ_CP133454.1 See Comparison
NZ_CP048368.1 See Comparison
LC744516.1 See Comparison
LC744483.1 See Comparison
LC744468.1 See Comparison
LC744462.1 See Comparison
LC744461.1 See Comparison
LC744457.1 See Comparison
LC744456.1 See Comparison
LC744455.1 See Comparison
LC744452.1 See Comparison
LC744450.1 See Comparison
LC744444.1 See Comparison
LC744516.1 See Comparison
NZ_CP103530.1 See Comparison
NZ_CP082130.1 See Comparison
NZ_CP082128.1 See Comparison
NZ_CP133454.1 See Comparison
NZ_AP018833.1 See Comparison
NZ_CP048368.1 See Comparison
NZ_CP103530.1 See Comparison
NZ_CP060868.1 See Comparison
LC744483.1 See Comparison
LC744468.1 See Comparison
LC744462.1 See Comparison
LC744461.1 See Comparison
LC744457.1 See Comparison
LC744456.1 See Comparison
LC744455.1 See Comparison
LC744452.1 See Comparison
LC744450.1 See Comparison
LC744444.1 See Comparison
NZ_CP060868.1 See Comparison
NZ_CP133454.1 See Comparison
NZ_CP082130.1 See Comparison
NZ_AP018833.1 See Comparison
NZ_CP048368.1 See Comparison
LC744516.1 See Comparison
LC744483.1 See Comparison
LC744468.1 See Comparison
LC744462.1 See Comparison
LC744461.1 See Comparison
LC744457.1 See Comparison
LC744456.1 See Comparison
LC744455.1 See Comparison
LC744452.1 See Comparison
LC744450.1 See Comparison
LC744444.1 See Comparison
NZ_CP103530.1 See Comparison
NZ_CP060868.1 See Comparison
NZ_CP082130.1 See Comparison
NZ_CP133454.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore