Plasmid NZ_CP060868.1

Sequence

Nucleotide Information

Accession NZ_CP060868.1
Description Escherichia coli strain EC29 plasmid pEC29-NDM-5, complete sequence
Source refseq
Topology circular
Length 147459 bp
GC Content 0.53 %
Created at NCBI March 15, 2022



Assembly

Genome Data Information

Accession GCF_022558645.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 15904668

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Hangzhou
Original Query Type name
Coordinates (Lat/Lon) 30.25/120.21
Address China,Hangzhou

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

LC744516.1 See Comparison
LC744483.1 See Comparison
LC744468.1 See Comparison
LC744462.1 See Comparison
LC744461.1 See Comparison
LC744457.1 See Comparison
LC744456.1 See Comparison
LC744455.1 See Comparison
LC744452.1 See Comparison
LC744450.1 See Comparison
LC744444.1 See Comparison
NZ_CP103530.1 See Comparison
LC744483.1 See Comparison
NZ_CP082130.1 See Comparison
NZ_AP018833.1 See Comparison
NZ_CP082128.1 See Comparison
NZ_CP133454.1 See Comparison
NZ_CP048368.1 See Comparison
LC744516.1 See Comparison
LC744468.1 See Comparison
LC744462.1 See Comparison
LC744461.1 See Comparison
LC744457.1 See Comparison
LC744456.1 See Comparison
LC744455.1 See Comparison
LC744452.1 See Comparison
LC744450.1 See Comparison
LC744444.1 See Comparison
LC744483.1 See Comparison
NZ_CP082130.1 See Comparison
NZ_CP133454.1 See Comparison
NZ_CP048368.1 See Comparison
NZ_CP103530.1 See Comparison
NZ_CP082128.1 See Comparison
NZ_AP018833.1 See Comparison
LC744468.1 See Comparison
LC744516.1 See Comparison
LC744462.1 See Comparison
LC744461.1 See Comparison
LC744457.1 See Comparison
LC744456.1 See Comparison
LC744455.1 See Comparison
LC744452.1 See Comparison
LC744450.1 See Comparison
LC744444.1 See Comparison
NZ_CP133454.1 See Comparison
NZ_CP060868.1 See Comparison
NZ_CP082128.1 See Comparison
NZ_CP103530.1 See Comparison
NZ_CP082130.1 See Comparison
LC744468.1 See Comparison
NZ_CP048368.1 See Comparison
LC744516.1 See Comparison
NZ_AP018833.1 See Comparison
LC744462.1 See Comparison
LC744461.1 See Comparison
LC744457.1 See Comparison
LC744456.1 See Comparison
LC744455.1 See Comparison
LC744452.1 See Comparison
LC744450.1 See Comparison
LC744444.1 See Comparison
NZ_CP103530.1 See Comparison
LC744483.1 See Comparison
NZ_CP133454.1 See Comparison
NZ_CP082130.1 See Comparison
NZ_CP082128.1 See Comparison
NZ_AP018833.1 See Comparison
LC744516.1 See Comparison
NZ_CP048368.1 See Comparison
LC744483.1 See Comparison
LC744457.1 See Comparison
LC744456.1 See Comparison
LC744455.1 See Comparison
LC744452.1 See Comparison
LC744450.1 See Comparison
LC744444.1 See Comparison
LC744468.1 See Comparison
LC744462.1 See Comparison
LC744461.1 See Comparison
NZ_CP082130.1 See Comparison
NZ_CP103530.1 See Comparison
NZ_CP082128.1 See Comparison
LC744452.1 See Comparison
NZ_CP133454.1 See Comparison
NZ_AP018833.1 See Comparison
LC744516.1 See Comparison
NZ_CP048368.1 See Comparison
LC744450.1 See Comparison
LC744444.1 See Comparison
LC744483.1 See Comparison
LC744468.1 See Comparison
LC744462.1 See Comparison
LC744461.1 See Comparison
LC744457.1 See Comparison
LC744456.1 See Comparison
LC744455.1 See Comparison
NZ_CP082130.1 See Comparison
NZ_CP082128.1 See Comparison
NZ_CP103530.1 See Comparison
NZ_CP133454.1 See Comparison
NZ_AP018833.1 See Comparison
NZ_CP048368.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore