Plasmid NZ_CP079775.1

Sequence

Nucleotide Information

Accession NZ_CP079775.1
Description Escherichia coli strain GS04 plasmid pGS04EC-3
Source refseq
Topology linear
Length 33587 bp
GC Content 0.42 %
Created at NCBI Sept. 8, 2022



Assembly

Genome Data Information

Accession GCF_024971875.1
Assembly Coverage 900


Biosample

Curated Collection Information
Accession 20236813

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Sichuan
Original Query Type name
Coordinates (Lat/Lon) 30.50/102.50
Address China,Sichuan

ECOSYSTEM
Original Query Duck,cloacal swabs,cloacal swab
Classification host_associated
Host-associated Taxon
  • Anas platyrhynchos (8839)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP133489.1 See Comparison
NZ_CP132668.1 See Comparison
NZ_CP064021.1 See Comparison
NZ_CP064023.1 See Comparison
NZ_CP064014.1 See Comparison
NZ_CP064009.1 See Comparison
NZ_CP141795.1 See Comparison
NZ_MG557852.1 See Comparison
NZ_LC479452.1 See Comparison
NZ_MG210939.1 See Comparison
NZ_CP063335.1 See Comparison
NZ_CP019072.1 See Comparison
NZ_CP075733.1 See Comparison
NZ_CP098836.1 See Comparison
NZ_CP024041.1 See Comparison
NZ_CP049122.1 See Comparison
NZ_MN648330.1 See Comparison
NZ_CP079779.1 See Comparison
NZ_CP079775.1 See Comparison
NZ_CP024919.1 See Comparison
NZ_CP132668.1 See Comparison
NZ_CP024462.1 See Comparison
NZ_CP133489.1 See Comparison
NZ_CP064021.1 See Comparison
NZ_CP064023.1 See Comparison
NZ_CP064014.1 See Comparison
NZ_CP064009.1 See Comparison
NZ_LC479452.1 See Comparison
NZ_CP141795.1 See Comparison
NZ_MG557852.1 See Comparison
NZ_MG210939.1 See Comparison
NZ_CP049122.1 See Comparison
NZ_CP063335.1 See Comparison
NZ_CP079779.1 See Comparison
NZ_MN648330.1 See Comparison
NZ_CP098836.1 See Comparison
NZ_CP075733.1 See Comparison
NZ_CP133489.1 See Comparison
NZ_CP024041.1 See Comparison
NZ_CP024919.1 See Comparison
NZ_CP019072.1 See Comparison
NZ_CP024462.1 See Comparison
NZ_CP064021.1 See Comparison
NZ_CP132668.1 See Comparison
NZ_CP064023.1 See Comparison
NZ_CP064014.1 See Comparison
NZ_CP064009.1 See Comparison
NZ_CP063335.1 See Comparison
NZ_MG557852.1 See Comparison
NZ_CP141795.1 See Comparison
NZ_LC479452.1 See Comparison
NZ_MG210939.1 See Comparison
NZ_MN648330.1 See Comparison
NZ_CP049122.1 See Comparison
NZ_CP079779.1 See Comparison
NZ_CP098836.1 See Comparison
NZ_CP075733.1 See Comparison
NZ_CP024041.1 See Comparison
NZ_CP024919.1 See Comparison
NZ_CP019072.1 See Comparison
NZ_CP024462.1 See Comparison
NZ_CP064021.1 See Comparison
NZ_CP133489.1 See Comparison
NZ_CP132668.1 See Comparison
NZ_CP064023.1 See Comparison
NZ_CP064014.1 See Comparison
NZ_CP064009.1 See Comparison
NZ_LC479452.1 See Comparison
NZ_CP141795.1 See Comparison
NZ_MG557852.1 See Comparison
NZ_MG210939.1 See Comparison
NZ_CP024041.1 See Comparison
NZ_CP063335.1 See Comparison
NZ_MN648330.1 See Comparison
NZ_CP079779.1 See Comparison
NZ_CP049122.1 See Comparison
NZ_CP075733.1 See Comparison
NZ_CP098836.1 See Comparison
NZ_CP024919.1 See Comparison
NZ_CP133489.1 See Comparison
NZ_CP019072.1 See Comparison
NZ_CP024462.1 See Comparison
NZ_CP132668.1 See Comparison
NZ_MG557852.1 See Comparison
NZ_CP064021.1 See Comparison
NZ_CP064023.1 See Comparison
NZ_CP064014.1 See Comparison
NZ_CP064009.1 See Comparison
NZ_CP141795.1 See Comparison
NZ_MN648330.1 See Comparison
NZ_LC479452.1 See Comparison
NZ_MG210939.1 See Comparison
NZ_CP063335.1 See Comparison
NZ_CP049122.1 See Comparison
NZ_CP019072.1 See Comparison
NZ_CP079779.1 See Comparison
NZ_CP024041.1 See Comparison
NZ_CP024919.1 See Comparison
NZ_CP075733.1 See Comparison
NZ_CP098836.1 See Comparison
NZ_CP141795.1 See Comparison
NZ_CP132668.1 See Comparison
NZ_CP064021.1 See Comparison
NZ_CP064023.1 See Comparison
NZ_CP064014.1 See Comparison
NZ_CP064009.1 See Comparison
NZ_CP024462.1 See Comparison
NZ_CP133489.1 See Comparison
NZ_MG210939.1 See Comparison
NZ_MG557852.1 See Comparison
NZ_LC479452.1 See Comparison
NZ_MN648330.1 See Comparison
NZ_CP063335.1 See Comparison
NZ_CP049122.1 See Comparison
NZ_CP019072.1 See Comparison
NZ_CP079779.1 See Comparison
NZ_CP075733.1 See Comparison
NZ_CP098836.1 See Comparison
NZ_CP024041.1 See Comparison
NZ_CP024919.1 See Comparison
NZ_CP133489.1 See Comparison
NZ_CP024462.1 See Comparison
NZ_CP132668.1 See Comparison
NZ_MG557852.1 See Comparison
NZ_CP141795.1 See Comparison
NZ_CP064021.1 See Comparison
NZ_CP064023.1 See Comparison
NZ_CP064014.1 See Comparison
NZ_CP064009.1 See Comparison
NZ_CP063335.1 See Comparison
NZ_LC479452.1 See Comparison
NZ_MG210939.1 See Comparison
NZ_CP024041.1 See Comparison
NZ_CP049122.1 See Comparison
NZ_CP079779.1 See Comparison
NZ_CP075733.1 See Comparison
NZ_MN648330.1 See Comparison
NZ_CP098836.1 See Comparison
NZ_CP024919.1 See Comparison
NZ_CP024462.1 See Comparison
NZ_CP019072.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2