Plasmid NZ_CP049122.1

Sequence

Nucleotide Information

Accession	NZ_CP049122.1
Description	Escherichia coli strain EC931 plasmid pEC931_mcr, complete sequence
Source	refseq
Topology	circular
Length	33858 bp
GC Content	0.42 %
Created at NCBI	Sept. 11, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_014522225.1
Assembly Coverage	100

Biosample

Curated Collection Information

Accession	14164122

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	29.334975N;120.121983E
Original Query Type	coordinates
Coordinates (Lat/Lon)	29.33/120.12
Address	浙江大学医学院附属第四医院, 商城大道, 义乌国际商贸城, Yiwu, Jinhua, Zhejiang, China

ECOSYSTEM

Original Query	Homo sapiens,urine
Classification	host_associated,urinary_system
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	Urinary tract infection
DOID/SYMP	Urinary tract infection (DOID:0080784 ) An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP024041.1	See Comparison
NZ_CP024919.1	See Comparison
NZ_CP019072.1	See Comparison
NZ_CP024462.1	See Comparison
NZ_CP133489.1	See Comparison
NZ_CP132668.1	See Comparison
NZ_CP064021.1	See Comparison
NZ_CP064023.1	See Comparison
NZ_CP064014.1	See Comparison
NZ_CP064009.1	See Comparison
NZ_CP141795.1	See Comparison
NZ_MG557852.1	See Comparison
NZ_MG210939.1	See Comparison
NZ_LC479452.1	See Comparison
NZ_CP049122.1	See Comparison
NZ_CP063335.1	See Comparison
NZ_CP075733.1	See Comparison
NZ_MN648330.1	See Comparison
NZ_CP079779.1	See Comparison
NZ_CP079775.1	See Comparison
NZ_CP024041.1	See Comparison
NZ_CP098836.1	See Comparison
NZ_CP024919.1	See Comparison
NZ_CP019072.1	See Comparison
NZ_CP064021.1	See Comparison
NZ_CP024462.1	See Comparison
NZ_CP133489.1	See Comparison
NZ_CP132668.1	See Comparison
NZ_CP064023.1	See Comparison
NZ_CP064014.1	See Comparison
NZ_CP064009.1	See Comparison
NZ_CP079779.1	See Comparison
NZ_LC479452.1	See Comparison
NZ_MG210939.1	See Comparison
NZ_CP063335.1	See Comparison
NZ_CP141795.1	See Comparison
NZ_MG557852.1	See Comparison
NZ_MN648330.1	See Comparison
NZ_CP079775.1	See Comparison
NZ_CP024041.1	See Comparison
NZ_CP075733.1	See Comparison
NZ_CP098836.1	See Comparison
NZ_CP024919.1	See Comparison
NZ_CP019072.1	See Comparison
NZ_CP024462.1	See Comparison
NZ_LC479452.1	See Comparison
NZ_CP064014.1	See Comparison
NZ_CP064009.1	See Comparison
NZ_CP133489.1	See Comparison
NZ_CP132668.1	See Comparison
NZ_CP064021.1	See Comparison
NZ_CP064023.1	See Comparison
NZ_CP141795.1	See Comparison
NZ_MG557852.1	See Comparison
NZ_MN648330.1	See Comparison
NZ_MG210939.1	See Comparison
NZ_CP063335.1	See Comparison
NZ_CP079779.1	See Comparison
NZ_CP079775.1	See Comparison
NZ_CP098836.1	See Comparison
NZ_CP075733.1	See Comparison
NZ_CP024041.1	See Comparison
NZ_CP024919.1	See Comparison
NZ_CP024462.1	See Comparison
NZ_CP019072.1	See Comparison
NZ_CP133489.1	See Comparison
NZ_LC479452.1	See Comparison
NZ_MG557852.1	See Comparison
NZ_CP132668.1	See Comparison
NZ_CP064021.1	See Comparison
NZ_CP064023.1	See Comparison
NZ_CP064014.1	See Comparison
NZ_CP064009.1	See Comparison
NZ_CP141795.1	See Comparison
NZ_MG557852.1	See Comparison
NZ_MG210939.1	See Comparison
NZ_CP063335.1	See Comparison
NZ_CP079779.1	See Comparison
NZ_CP079775.1	See Comparison
NZ_CP098836.1	See Comparison
NZ_CP019072.1	See Comparison
NZ_CP133489.1	See Comparison
NZ_CP141795.1	See Comparison
NZ_MN648330.1	See Comparison
NZ_CP075733.1	See Comparison
NZ_CP024041.1	See Comparison
NZ_CP024919.1	See Comparison
NZ_CP024462.1	See Comparison
NZ_CP132668.1	See Comparison
NZ_CP064021.1	See Comparison
NZ_CP064023.1	See Comparison
NZ_CP064014.1	See Comparison
NZ_CP064009.1	See Comparison
NZ_CP063335.1	See Comparison
NZ_LC479452.1	See Comparison
NZ_MG210939.1	See Comparison
NZ_CP024041.1	See Comparison
NZ_MN648330.1	See Comparison
NZ_CP075733.1	See Comparison
NZ_CP079779.1	See Comparison
NZ_CP079775.1	See Comparison
NZ_CP098836.1	See Comparison
NZ_CP024919.1	See Comparison
NZ_CP024462.1	See Comparison
NZ_CP019072.1	See Comparison
NZ_CP133489.1	See Comparison
NZ_CP132668.1	See Comparison
NZ_LC479452.1	See Comparison
NZ_CP141795.1	See Comparison
NZ_MG557852.1	See Comparison
NZ_CP064021.1	See Comparison
NZ_CP064023.1	See Comparison
NZ_CP064014.1	See Comparison
NZ_CP064009.1	See Comparison
NZ_MG210939.1	See Comparison
NZ_CP063335.1	See Comparison
NZ_MN648330.1	See Comparison
NZ_CP079779.1	See Comparison
NZ_CP079775.1	See Comparison
NZ_CP098836.1	See Comparison
NZ_CP075733.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore