Plasmid NZ_CP077775.1

Sequence

Nucleotide Information

Accession NZ_CP077775.1
Description Klebsiella pneumoniae strain CDI694 plasmid pCDI694-12.0, complete sequence
Source refseq
Topology circular
Length 11972 bp
GC Content 0.56 %
Created at NCBI July 7, 2021



Assembly

Genome Data Information

Accession GCF_019107705.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 19925007

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGmobCcopy
PGAGTraM recognition domain-containing proteincopy
PGAGcolicin release lysis proteincopy
PGAGcolicin E3-like toxin immunity proteincopy
PGAGcolicin-like bacteriocin tRNase domain-containing proteincopy
PGAGltrAcopy
PGAGhypothetical proteincopy
PGAGtolAcopy
PGAGTonB family proteincopy
PGAGCopG family ribbon-helix-helix proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 17 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_009793_00003MOBC1126011970minus94.093981.28e-137433
replicon000003__NC_002119_00001ColRNAI_rep_cluster_185727823363plus93.3331000859
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 2 of 2 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2