Plasmid NZ_CP075467.1

Sequence

Nucleotide Information

Accession NZ_CP075467.1
Description Escherichia coli strain NT1N34 plasmid pNT1N34-tetX4, complete sequence
Source refseq
Topology circular
Length 103081 bp
GC Content 0.50 %
Created at NCBI May 18, 2021



Assembly

Genome Data Information

Accession GCF_014904135.2
Assembly Coverage 20


Biosample

Curated Collection Information
Accession 16120650

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 32.01N;120.86E
Original Query Type coordinates
Coordinates (Lat/Lon) 32.01/120.86
Address 南通大学附属医院, Xisi Road, 新城桥街道, Chongchuan District, Nantong, Jiangsu, 226000, China

ECOSYSTEM
Original Query pig,genome,pig farm
Classification host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_MW423609.1 See Comparison
NZ_CP075473.1 See Comparison
NZ_CP075470.1 See Comparison
NZ_CP075463.1 See Comparison
NZ_CP075485.1 See Comparison
NZ_CP075471.1 See Comparison
NZ_CP075481.1 See Comparison
NZ_CP075479.1 See Comparison
NZ_CP075486.1 See Comparison
NZ_CP041443.1 See Comparison
NZ_CP139131.1 See Comparison
NZ_CP050174.1 See Comparison
NZ_MT219817.1 See Comparison
NZ_CP041286.1 See Comparison
NZ_MT219820.1 See Comparison
CP095447.1 See Comparison
NZ_CP097182.1 See Comparison
NZ_MW423609.1 See Comparison
NZ_CP041443.1 See Comparison
NZ_CP075473.1 See Comparison
NZ_CP075470.1 See Comparison
NZ_CP075463.1 See Comparison
NZ_CP075485.1 See Comparison
NZ_CP075471.1 See Comparison
NZ_CP075467.1 See Comparison
NZ_CP075481.1 See Comparison
NZ_CP075479.1 See Comparison
NZ_CP075486.1 See Comparison
NZ_MT219820.1 See Comparison
NZ_CP139131.1 See Comparison
NZ_CP041286.1 See Comparison
NZ_CP050174.1 See Comparison
CP095447.1 See Comparison
NZ_MT219817.1 See Comparison
NZ_CP097182.1 See Comparison
NZ_CP075473.1 See Comparison
NZ_MW423609.1 See Comparison
NZ_CP075470.1 See Comparison
NZ_CP075463.1 See Comparison
NZ_CP075485.1 See Comparison
NZ_CP075471.1 See Comparison
NZ_CP075481.1 See Comparison
NZ_CP075479.1 See Comparison
NZ_CP075486.1 See Comparison
NZ_CP139131.1 See Comparison
NZ_CP041443.1 See Comparison
NZ_CP075473.1 See Comparison
NZ_CP097182.1 See Comparison
CP095447.1 See Comparison
NZ_CP041286.1 See Comparison
NZ_CP050174.1 See Comparison
NZ_MT219817.1 See Comparison
NZ_MT219820.1 See Comparison
NZ_MW423609.1 See Comparison
NZ_CP075470.1 See Comparison
NZ_CP075463.1 See Comparison
NZ_CP075485.1 See Comparison
NZ_CP075471.1 See Comparison
NZ_CP075481.1 See Comparison
NZ_CP075479.1 See Comparison
NZ_CP075486.1 See Comparison
NZ_CP041443.1 See Comparison
NZ_CP041286.1 See Comparison
NZ_CP139131.1 See Comparison
NZ_CP050174.1 See Comparison
NZ_MT219817.1 See Comparison
NZ_MT219820.1 See Comparison
NZ_CP097182.1 See Comparison
CP095447.1 See Comparison
NZ_CP075473.1 See Comparison
NZ_MW423609.1 See Comparison
NZ_CP075470.1 See Comparison
NZ_CP075463.1 See Comparison
NZ_CP075485.1 See Comparison
NZ_CP075471.1 See Comparison
NZ_CP075481.1 See Comparison
NZ_CP075479.1 See Comparison
NZ_CP075486.1 See Comparison
NZ_CP041443.1 See Comparison
NZ_CP139131.1 See Comparison
NZ_CP041286.1 See Comparison
NZ_CP097182.1 See Comparison
CP095447.1 See Comparison
NZ_MW423609.1 See Comparison
NZ_CP041443.1 See Comparison
NZ_CP139131.1 See Comparison
NZ_CP041286.1 See Comparison
NZ_CP050174.1 See Comparison
NZ_MT219817.1 See Comparison
NZ_MT219820.1 See Comparison
NZ_CP075473.1 See Comparison
NZ_CP075470.1 See Comparison
NZ_CP075463.1 See Comparison
NZ_CP075485.1 See Comparison
NZ_CP075471.1 See Comparison
NZ_CP075481.1 See Comparison
NZ_CP075479.1 See Comparison
NZ_CP075486.1 See Comparison
NZ_CP050174.1 See Comparison
NZ_MT219820.1 See Comparison
NZ_MT219817.1 See Comparison
NZ_CP097182.1 See Comparison
CP095447.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore