Plasmid NZ_CP041286.1

Sequence

Nucleotide Information

Accession NZ_CP041286.1
Description Escherichia coli strain 54 plasmid p54-tetX, complete sequence
Source refseq
Topology circular
Length 102347 bp
GC Content 0.50 %
Created at NCBI April 16, 2020



Assembly

Genome Data Information

Accession GCF_012278675.1
Assembly Coverage 50


Biosample

Curated Collection Information
Accession 12158158

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China
Original Query Type name
Coordinates (Lat/Lon) 34.41/86.03
Address China

ECOSYSTEM
Original Query cow,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP041286.1 See Comparison
NZ_CP050174.1 See Comparison
NZ_MT219817.1 See Comparison
NZ_MT219820.1 See Comparison
CP095447.1 See Comparison
NZ_CP097182.1 See Comparison
NZ_MW423609.1 See Comparison
NZ_CP050174.1 See Comparison
NZ_CP075473.1 See Comparison
NZ_CP075470.1 See Comparison
NZ_CP075463.1 See Comparison
NZ_CP075485.1 See Comparison
NZ_CP075471.1 See Comparison
NZ_CP075467.1 See Comparison
NZ_CP139131.1 See Comparison
NZ_CP075481.1 See Comparison
NZ_CP075479.1 See Comparison
NZ_CP075486.1 See Comparison
NZ_CP041443.1 See Comparison
NZ_CP139131.1 See Comparison
NZ_MT219820.1 See Comparison
CP095447.1 See Comparison
NZ_CP075473.1 See Comparison
NZ_CP075470.1 See Comparison
NZ_CP075463.1 See Comparison
NZ_CP075485.1 See Comparison
NZ_CP075471.1 See Comparison
NZ_CP075467.1 See Comparison
NZ_CP075481.1 See Comparison
NZ_CP075479.1 See Comparison
NZ_CP075486.1 See Comparison
NZ_MT219817.1 See Comparison
NZ_CP097182.1 See Comparison
NZ_MW423609.1 See Comparison
NZ_CP041443.1 See Comparison
NZ_MT219817.1 See Comparison
NZ_CP050174.1 See Comparison
NZ_CP097182.1 See Comparison
NZ_MT219820.1 See Comparison
NZ_CP041443.1 See Comparison
CP095447.1 See Comparison
NZ_CP075473.1 See Comparison
NZ_CP075470.1 See Comparison
NZ_CP075463.1 See Comparison
NZ_CP075485.1 See Comparison
NZ_CP075471.1 See Comparison
NZ_CP075467.1 See Comparison
NZ_CP075481.1 See Comparison
NZ_CP075479.1 See Comparison
NZ_CP075486.1 See Comparison
NZ_MW423609.1 See Comparison
NZ_CP139131.1 See Comparison
NZ_CP050174.1 See Comparison
NZ_MT219817.1 See Comparison
NZ_CP097182.1 See Comparison
NZ_MT219820.1 See Comparison
NZ_MW423609.1 See Comparison
CP095447.1 See Comparison
NZ_CP139131.1 See Comparison
NZ_CP075473.1 See Comparison
NZ_CP075470.1 See Comparison
NZ_CP075463.1 See Comparison
NZ_CP075485.1 See Comparison
NZ_CP075471.1 See Comparison
NZ_CP075467.1 See Comparison
NZ_CP075481.1 See Comparison
NZ_CP075479.1 See Comparison
NZ_CP075486.1 See Comparison
NZ_CP041443.1 See Comparison
NZ_MT219817.1 See Comparison
NZ_CP050174.1 See Comparison
NZ_CP075473.1 See Comparison
NZ_CP097182.1 See Comparison
NZ_MW423609.1 See Comparison
NZ_MT219820.1 See Comparison
CP095447.1 See Comparison
NZ_CP075470.1 See Comparison
NZ_CP075463.1 See Comparison
NZ_CP075485.1 See Comparison
NZ_CP075471.1 See Comparison
NZ_CP075467.1 See Comparison
NZ_CP075481.1 See Comparison
NZ_CP075479.1 See Comparison
NZ_CP075486.1 See Comparison
CP095447.1 See Comparison
NZ_CP097182.1 See Comparison
NZ_CP041443.1 See Comparison
NZ_CP139131.1 See Comparison
NZ_CP050174.1 See Comparison
NZ_MT219817.1 See Comparison
NZ_MT219820.1 See Comparison
NZ_CP075473.1 See Comparison
NZ_MW423609.1 See Comparison
NZ_CP075470.1 See Comparison
NZ_CP075463.1 See Comparison
NZ_CP075485.1 See Comparison
NZ_CP075471.1 See Comparison
NZ_CP075467.1 See Comparison
NZ_CP075481.1 See Comparison
NZ_CP075479.1 See Comparison
NZ_CP075486.1 See Comparison
NZ_CP041443.1 See Comparison
NZ_CP139131.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore