Plasmid NZ_CP073774.1

Sequence

Nucleotide Information

Accession NZ_CP073774.1
Description Enterobacter hormaechei strain SH19PTE2 plasmid pYUSHP2-3, complete sequence
Source refseq
Topology circular
Length 44286 bp
GC Content 0.51 %
Created at NCBI May 12, 2021



Assembly

Genome Data Information

Accession GCF_018255815.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 18859124

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 31.23N;121.47E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.23/121.47
Address People's Square, 120, People's Avenue, Jiangyin, Nanjingdonglu Subdistrict, Shanghai, Huangpu District, Shanghai, 200001, China

ECOSYSTEM
Original Query pig feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaTEM-1copy
rgirmtBcopy
amrfinderplusaph(3'')-Ibcopy
amrfinderplusaph(6)-Idcopy
amrfinderplusrmtB1copy
PGAGreplication initiation proteincopy
PGAGrecombinase family proteincopy
PGAGIS6-like element IS26 family transposasecopy
PGAGAPH(6)-I family aminoglycoside O-phosphotransferasecopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 62 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000155__CP018649IncN2811000plus10010001330
relaxaseNC_015599_00019MOBF2779530971minus99.8119802030
oriTNZ_CP013027MOBF3298033247minus1001008.36e-138496
mate-pair-formationNC_009131_00030MPF_T94379751plus1001006.62e-63212
mate-pair-formationNC_011617_00041MPF_T975412351plus99.76910001809
mate-pair-formationNC_014368_00014MPF_T1333614373plus91.9081001.5100000000000002e-163513
mate-pair-formationNC_007682_00044MPF_T1459515290plus1001009.98e-155481
mate-pair-formationNC_008612_00190MPF_T1530416185plus99.321001.61e-175544
mate-pair-formationNC_022375_00024MPF_T3097432500minus99.8041000996
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 9 of 9 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2