Plasmid NZ_CP072609.1

Sequence

Nucleotide Information

Accession NZ_CP072609.1
Description Desulfovibrio desulfuricans strain L4 plasmid pDsulf-L4, complete sequence
Source refseq
Topology circular
Length 10867 bp
GC Content 0.62 %
Created at NCBI April 10, 2021



Assembly

Genome Data Information

Accession GCF_017815575.1
Assembly Coverage 302


Biosample

Curated Collection Information

Accession 17304468

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization




Similar Plasmids

based on Mash distance

CP100656.1 See Comparison
NZ_CP051390.1 See Comparison
NZ_CP051390.1 See Comparison
NZ_CP051417.1 See Comparison
CP082387.1 See Comparison
CP082508.1 See Comparison
CP082722.1 See Comparison
NZ_CP030774.1 See Comparison
CP100656.1 See Comparison
CP082612.1 See Comparison
CP082702.1 See Comparison
CP082728.1 See Comparison
NZ_CP051417.1 See Comparison
CP082508.1 See Comparison
CP082722.1 See Comparison
NZ_CP030774.1 See Comparison
CP082612.1 See Comparison
CP082702.1 See Comparison
CP082728.1 See Comparison
CP082387.1 See Comparison
CP100656.1 See Comparison
NZ_CP051390.1 See Comparison
CP082612.1 See Comparison
CP082702.1 See Comparison
CP082728.1 See Comparison
CP082387.1 See Comparison
NZ_CP051390.1 See Comparison
NZ_CP051417.1 See Comparison
CP082508.1 See Comparison
CP082722.1 See Comparison
NZ_CP030774.1 See Comparison
CP100656.1 See Comparison
NZ_CP051417.1 See Comparison
CP082508.1 See Comparison
CP082722.1 See Comparison
CP082722.1 See Comparison
CP082612.1 See Comparison
CP082702.1 See Comparison
CP082728.1 See Comparison
CP082387.1 See Comparison
NZ_CP030774.1 See Comparison
CP100656.1 See Comparison
NZ_CP051390.1 See Comparison
NZ_CP051417.1 See Comparison
NZ_CP072609.1 See Comparison
CP082612.1 See Comparison
CP082702.1 See Comparison
CP082728.1 See Comparison
CP082387.1 See Comparison
CP082508.1 See Comparison
NZ_CP030774.1 See Comparison
CP100656.1 See Comparison
CP082612.1 See Comparison
NZ_CP051390.1 See Comparison
NZ_CP051417.1 See Comparison
CP082702.1 See Comparison
CP082728.1 See Comparison
CP082387.1 See Comparison
NZ_CP030774.1 See Comparison
CP082508.1 See Comparison
CP082722.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore