Plasmid CP082722.1

Sequence

Nucleotide Information

Accession CP082722.1
Description Salmonella enterica subsp. enterica serovar Reading strain CVM N17S288 isolate 17NY04GT13-S3 plasmid pN17S288, complete sequence
Source insd
Topology circular
Length 11038 bp
GC Content 0.61 %
Created at NCBI Sept. 9, 2021



Assembly

Genome Data Information

Accession GCA_019915705.1
Assembly Coverage 667


Biosample

Curated Collection Information
Accession 20351457

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,NY
Original Query Type name
Coordinates (Lat/Lon) 43.16/-75.84
Address USA,NY

ECOSYSTEM
Original Query Turkey Patties
Classification food,meat
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP051390.1 See Comparison
NZ_CP051417.1 See Comparison
NZ_CP030774.1 See Comparison
CP082612.1 See Comparison
CP082702.1 See Comparison
CP082728.1 See Comparison
CP082387.1 See Comparison
CP082508.1 See Comparison
NZ_CP072609.1 See Comparison
NZ_CP030774.1 See Comparison
CP100656.1 See Comparison
NZ_CP051390.1 See Comparison
NZ_CP051417.1 See Comparison
CP082612.1 See Comparison
CP082702.1 See Comparison
CP082728.1 See Comparison
CP082387.1 See Comparison
CP082508.1 See Comparison
NZ_CP072609.1 See Comparison
CP100656.1 See Comparison
NZ_CP051390.1 See Comparison
NZ_CP051417.1 See Comparison
NZ_CP072609.1 See Comparison
CP082612.1 See Comparison
CP082702.1 See Comparison
CP082728.1 See Comparison
CP082387.1 See Comparison
CP082508.1 See Comparison
CP082722.1 See Comparison
NZ_CP051390.1 See Comparison
NZ_CP030774.1 See Comparison
CP100656.1 See Comparison
NZ_CP051417.1 See Comparison
NZ_CP072609.1 See Comparison
CP082612.1 See Comparison
CP082702.1 See Comparison
CP082728.1 See Comparison
CP082387.1 See Comparison
CP082508.1 See Comparison
NZ_CP030774.1 See Comparison
CP100656.1 See Comparison
NZ_CP030774.1 See Comparison
NZ_CP051390.1 See Comparison
NZ_CP051417.1 See Comparison
CP082612.1 See Comparison
CP082702.1 See Comparison
CP082728.1 See Comparison
CP082387.1 See Comparison
CP082508.1 See Comparison
NZ_CP072609.1 See Comparison
NZ_CP051390.1 See Comparison
CP100656.1 See Comparison
NZ_CP051417.1 See Comparison
CP082612.1 See Comparison
CP082702.1 See Comparison
CP082728.1 See Comparison
CP082387.1 See Comparison
CP082508.1 See Comparison
NZ_CP030774.1 See Comparison
CP100656.1 See Comparison
NZ_CP072609.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore