Plasmid NZ_CP072593.1

Sequence

Nucleotide Information

Accession	NZ_CP072593.1
Description	Enterococcus faecium strain VB976 plasmid pVB976_p7, complete sequence
Source	refseq
Topology	circular
Length	2057 bp
GC Content	0.38 %
Created at NCBI	April 10, 2021

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Enterococcus faecium (1352)

Lineage

Superkingdom	Bacteria (2)
Phylum	Bacillota (1239)
Class	Bacilli (91061)
Order	Lactobacillales (186826)
Family	Enterococcaceae (81852)
Genus	Enterococcus (1350)
Species	Enterococcus_faecium (1352)
Strain

Assembly

Genome Data Information

Accession	GCF_017815695.1
Assembly Coverage	124.4

Biosample

Curated Collection Information

Accession	18533868

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	12.9165N;79.1325E
Original Query Type	coordinates
Coordinates (Lat/Lon)	12.92/79.13
Address	NH38, Vellore, Vellore District, Tamil Nadu, 632008, India

ECOSYSTEM

Original Query	Homo sapiens,blood
Classification	blood,circulatory_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	Sepsis
DOID/SYMP	Disease infectious agent (DOID:0050117 ) A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP065762.1	See Comparison
NZ_CP072585.1	See Comparison
NZ_CP071968.1	See Comparison
NZ_CP044282.1	See Comparison
NZ_CP044327.1	See Comparison
AP031266.1	See Comparison
NZ_LR135393.1	See Comparison
NZ_LR135178.1	See Comparison
NZ_CP059754.1	See Comparison
NZ_CP059746.1	See Comparison
AP026640.1	See Comparison
NZ_CP059792.1	See Comparison
NZ_CP059815.1	See Comparison
NZ_CP059762.1	See Comparison
NZ_CP059822.1	See Comparison
NZ_CP071968.1	See Comparison
NZ_CP065762.1	See Comparison
NZ_CP072585.1	See Comparison
NZ_LR135393.1	See Comparison
NZ_CP044282.1	See Comparison
NZ_LR135178.1	See Comparison
NZ_CP044327.1	See Comparison
AP031266.1	See Comparison
NZ_CP059754.1	See Comparison
NZ_CP059746.1	See Comparison
NZ_CP065762.1	See Comparison
NZ_CP059792.1	See Comparison
NZ_CP059815.1	See Comparison
NZ_CP059762.1	See Comparison
NZ_CP059822.1	See Comparison
AP026640.1	See Comparison
NZ_CP072585.1	See Comparison
NZ_CP044327.1	See Comparison
NZ_CP071968.1	See Comparison
NZ_LR135393.1	See Comparison
NZ_LR135178.1	See Comparison
AP031266.1	See Comparison
NZ_CP044282.1	See Comparison
NZ_CP059754.1	See Comparison
NZ_CP059746.1	See Comparison
AP026640.1	See Comparison
NZ_CP059792.1	See Comparison
NZ_CP059815.1	See Comparison
NZ_CP059762.1	See Comparison
NZ_CP059822.1	See Comparison
NZ_CP044282.1	See Comparison
NZ_CP065762.1	See Comparison
NZ_CP072585.1	See Comparison
NZ_CP071968.1	See Comparison
AP031266.1	See Comparison
NZ_LR135393.1	See Comparison
NZ_LR135178.1	See Comparison
NZ_CP065762.1	See Comparison
NZ_CP059822.1	See Comparison
NZ_CP044327.1	See Comparison
NZ_CP059754.1	See Comparison
NZ_CP059746.1	See Comparison
NZ_CP059792.1	See Comparison
NZ_CP059815.1	See Comparison
NZ_CP059762.1	See Comparison
AP026640.1	See Comparison
NZ_CP072585.1	See Comparison
AP031266.1	See Comparison
NZ_CP071968.1	See Comparison
NZ_CP044282.1	See Comparison
NZ_LR135393.1	See Comparison
NZ_LR135178.1	See Comparison
NZ_CP044327.1	See Comparison
NZ_CP059822.1	See Comparison
NZ_CP059754.1	See Comparison
NZ_CP059746.1	See Comparison
AP026640.1	See Comparison
NZ_CP059792.1	See Comparison
NZ_CP059815.1	See Comparison
NZ_CP059762.1	See Comparison
NZ_CP065762.1	See Comparison
NZ_CP072585.1	See Comparison
NZ_CP071968.1	See Comparison
NZ_CP072593.1	See Comparison
NZ_LR135393.1	See Comparison
NZ_CP044282.1	See Comparison
NZ_CP059762.1	See Comparison
AP031266.1	See Comparison
NZ_LR135178.1	See Comparison
NZ_CP044327.1	See Comparison
NZ_CP059754.1	See Comparison
NZ_CP059746.1	See Comparison
NZ_CP059822.1	See Comparison
NZ_CP059792.1	See Comparison
NZ_CP059815.1	See Comparison
AP026640.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore