Plasmid NZ_CP072409.1
Sequence
Nucleotide Information
| Accession | NZ_CP072409.1 |
|---|---|
| Description | Klebsiella pneumoniae strain B4650 plasmid p1B4650, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 127805 bp |
| GC Content | 0.53 % |
| Created at NCBI | April 6, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 18478563 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 12.9246N;79.1348E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 12.92/79.13 |
| Address | Christian Medical College Hospital, Ida Scudder Road, Sathuvachari, Vellore, Vellore District, Tamil Nadu, 632004, India |
ECOSYSTEM
| Original Query | Homo sapiens,blood |
|---|---|
| Classification | blood,circulatory_system,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | Bacteremia |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| rgi | CTX-M-186 | copy | ||
| amrfinderplus | qnrS1 | copy | ||
| amrfinderplus | rmtF1 | copy | ||
| amrfinderplus | arr-2 | copy | ||
| amrfinderplus | blaCTX-M | copy | ||
| amrfinderplus | aac(6')-Ib | copy | ||
| amrfinderplus | blaTEM-1 | copy | ||
| amrfinderplus | catB | copy | ||
| amrfinderplus | catA1 | copy | ||
| rgi | rmtF | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 148 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000097__NC_025166_00051 | IncFIB | 1 | 897 | plus | 100 | 100 | 0 | 1657 |
| replicon | CP033468_00001 | rep_cluster_2183 | 81361 | 82188 | minus | 82.289 | 96 | 0 | 715 |
| replicon | 000129__CP018340 | IncFII | 82223 | 82457 | plus | 99.574 | 100 | 7.44e-118 | 429 |
| relaxase | NC_021231_00058 | MOBF | 87504 | 92762 | minus | 97.148 | 100 | 0 | 3334 |
| relaxase | CP035180_00077 | MOBF | 92774 | 93529 | minus | 91.27 | 98 | 0 | 366 |
| mate-pair-formation | NC_021502_00150 | MPF_T | 92765 | 95074 | minus | 97.013 | 100 | 0 | 1419 |
| mate-pair-formation | NC_014312_00116 | MPF_F | 99282 | 99584 | minus | 100 | 100 | 4.22e-61 | 207 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 7 of 7 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |