Plasmid NZ_CP070988.1

Sequence

Nucleotide Information

Accession NZ_CP070988.1
Description Staphylococcus aureus strain WBG8287 plasmid pWBG751, complete sequence
Source refseq
Topology circular
Length 2473 bp
GC Content 0.31 %
Created at NCBI March 5, 2021



Assembly

Genome Data Information

Accession GCF_017088305.1
Assembly Coverage 306


Biosample

Curated Collection Information
Accession 14225426

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Australia, 6000, Western Australia, City of Perth, Perth, Wellington Street, 197,Royal Perth Hospital
Original Query Type name
Coordinates (Lat/Lon) -31.95/115.87
Address Australia, 6000, Western Australia, City of Perth, Perth, Wellington Street, 197,Royal Perth Hospital

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP094878.1 See Comparison
NZ_CP094871.1 See Comparison
NZ_CP014395.1 See Comparison
NZ_CP014405.1 See Comparison
NZ_CP014400.1 See Comparison
NC_013291.1 See Comparison
NZ_LR130514.1 See Comparison
NZ_CP014374.1 See Comparison
NZ_CP029165.1 See Comparison
NZ_CP094878.1 See Comparison
NZ_CP129368.1 See Comparison
CP045476.1 See Comparison
NZ_CP068138.1 See Comparison
NZ_CP058614.1 See Comparison
NZ_CP014390.1 See Comparison
NZ_CP014379.1 See Comparison
LC784003.1 See Comparison
NZ_CP094871.1 See Comparison
NC_013291.1 See Comparison
NZ_CP014395.1 See Comparison
NZ_CP014405.1 See Comparison
NZ_CP014400.1 See Comparison
NZ_CP014374.1 See Comparison
NZ_LR130514.1 See Comparison
LC784003.1 See Comparison
NZ_CP014390.1 See Comparison
NZ_CP014379.1 See Comparison
NZ_CP029165.1 See Comparison
NZ_CP129368.1 See Comparison
CP045476.1 See Comparison
NZ_CP070988.1 See Comparison
NZ_CP068138.1 See Comparison
NZ_CP058614.1 See Comparison
NZ_CP129368.1 See Comparison
NZ_CP094878.1 See Comparison
NZ_CP094871.1 See Comparison
NZ_CP014400.1 See Comparison
NZ_LR130514.1 See Comparison
NZ_CP014374.1 See Comparison
NZ_CP014390.1 See Comparison
NZ_CP014379.1 See Comparison
NZ_CP029165.1 See Comparison
NZ_CP014395.1 See Comparison
NZ_CP014405.1 See Comparison
NC_013291.1 See Comparison
LC784003.1 See Comparison
NZ_CP058614.1 See Comparison
CP045476.1 See Comparison
NZ_CP068138.1 See Comparison
NZ_CP014395.1 See Comparison
NZ_CP094878.1 See Comparison
NZ_CP094871.1 See Comparison
NZ_CP014405.1 See Comparison
NZ_CP014400.1 See Comparison
NZ_LR130514.1 See Comparison
NC_013291.1 See Comparison
CP045476.1 See Comparison
NZ_CP014374.1 See Comparison
NZ_CP014390.1 See Comparison
NZ_CP014379.1 See Comparison
NZ_CP029165.1 See Comparison
NZ_CP129368.1 See Comparison
LC784003.1 See Comparison
NZ_CP068138.1 See Comparison
NZ_CP058614.1 See Comparison
NZ_CP129368.1 See Comparison
NZ_CP014405.1 See Comparison
NZ_CP014400.1 See Comparison
NZ_LR130514.1 See Comparison
NZ_CP094878.1 See Comparison
NZ_CP094871.1 See Comparison
NZ_CP014395.1 See Comparison
NC_013291.1 See Comparison
NZ_CP014374.1 See Comparison
NZ_CP014390.1 See Comparison
NZ_CP014379.1 See Comparison
NZ_CP029165.1 See Comparison
CP045476.1 See Comparison
LC784003.1 See Comparison
NZ_CP014395.1 See Comparison
NZ_CP068138.1 See Comparison
NZ_CP058614.1 See Comparison
NZ_CP094878.1 See Comparison
NZ_CP094871.1 See Comparison
NZ_CP014405.1 See Comparison
NZ_CP014400.1 See Comparison
NZ_CP129368.1 See Comparison
NZ_LR130514.1 See Comparison
NC_013291.1 See Comparison
NZ_CP014374.1 See Comparison
NZ_CP014390.1 See Comparison
NZ_CP014379.1 See Comparison
NZ_CP029165.1 See Comparison
NZ_CP068138.1 See Comparison
CP045476.1 See Comparison
LC784003.1 See Comparison
NZ_CP094878.1 See Comparison
NZ_CP058614.1 See Comparison
NZ_CP094871.1 See Comparison
NZ_CP014395.1 See Comparison
NZ_CP014374.1 See Comparison
NZ_CP014390.1 See Comparison
NZ_CP014379.1 See Comparison
NZ_CP029165.1 See Comparison
NZ_CP129368.1 See Comparison
CP045476.1 See Comparison
NZ_CP068138.1 See Comparison
NZ_CP014405.1 See Comparison
NZ_CP014400.1 See Comparison
NC_013291.1 See Comparison
NZ_LR130514.1 See Comparison
LC784003.1 See Comparison
NZ_CP058614.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2