Plasmid NZ_CP069683.1

Sequence

Nucleotide Information

Accession	NZ_CP069683.1
Description	Escherichia coli O176:H45 strain MIN9 plasmid pMUB-MIN9-1, complete sequence
Source	refseq
Topology	circular
Length	283245 bp
GC Content	0.47 %
Created at NCBI	March 26, 2021

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (2810408)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_017570665.1
Assembly Coverage	100

Biosample

Curated Collection Information

Accession	17831482

PLASMID INFORMATION

Genotype	ST-6856

GEOGRAPHICAL INFORMATION

Original Query	53.12523570N;23.15905989E
Original Query Type	coordinates
Coordinates (Lat/Lon)	53.13/23.16
Address	Uniwersytecki Szpital Kliniczny, 24A, Marii Skłodowskiej-Curie, Osiedle Skłodowskiej, Piaski, Białystok, Podlaskie Voivodeship, 15-276, Poland

ECOSYSTEM

Original Query	Homo sapiens
Classification	host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP069683.1	See Comparison

Plasmid Visualization

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Greens

100

Hex

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B

Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	silR		copy
amrfinderplus	silB		copy
amrfinderplus	silA		copy
amrfinderplus	silC		copy
amrfinderplus	sul2		copy
amrfinderplus	silS		copy
amrfinderplus	sul1		copy
amrfinderplus	aadA2		copy
amrfinderplus	aadA1		copy
amrfinderplus	aadA1		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 317 entries

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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

oriT	NC_015864	MOBH	210591	211183	plus	100	100	0	1096
replicon	BX664015	IncHI2A	211	840	plus	99.524	100	0	1147
replicon	000340__KU353730	rep_cluster_1088	56393	57355	plus	100	100	0	1779
replicon	000195__NC_013728_00014	IncQ1	165540	166424	plus	100	100	0	1635
mate-pair-formation	NC_005211_00005	MPF_F	2758	3543	plus	100	100	2.33e-172	533
relaxase	NC_012555_00231	MOBH	214486	217629	plus	99.046	100	0	2120
mate-pair-formation	NC_009838_00006	MPF_F	3546	4814	plus	100	100	0	803
mate-pair-formation	NC_005211_00012	MPF_T	8955	11633	plus	99.888	100	0	1872
mate-pair-formation	NC_021845_00017	MPF_F	30044	31552	plus	99.006	100	0	990
mate-pair-formation	NC_005211_00030	MPF_F	31694	32749	plus	99.716	99	0	734
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 10 of 12 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2