Plasmid NZ_CP068302.1

Sequence

Nucleotide Information

Accession	NZ_CP068302.1
Description	Klebsiella pneumoniae strain RIVM_C016525 plasmid pRIVM_C016525_2, complete sequence
Source	refseq
Topology	circular
Length	69628 bp
GC Content	0.51 %
Created at NCBI	Jan. 26, 2021

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Klebsiella pneumoniae (573)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Klebsiella (570)
Species	Klebsiella_pneumoniae (573)
Strain

Biosample

Curated Collection Information

Accession	17304619

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Netherlands
Original Query Type	name
Coordinates (Lat/Lon)	52.24/5.53
Address	Netherlands

ECOSYSTEM

Original Query	Homo sapiens,Plasmid
Classification	cell_culture,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Similar Plasmids

based on Mash distance

NZ_CP137377.1	See Comparison
NZ_CP137356.1	See Comparison
NZ_CP126769.1	See Comparison
NZ_CP126790.1	See Comparison
NZ_CP141907.1	See Comparison
NZ_CP068940.1	See Comparison
NZ_CP068574.1	See Comparison
NZ_CP064115.1	See Comparison
NZ_CP068918.1	See Comparison
NZ_CP068915.1	See Comparison
NZ_CP068941.1	See Comparison
NZ_CP068299.1	See Comparison
NZ_CP137377.1	See Comparison
NZ_CP068302.1	See Comparison
NZ_CP068301.1	See Comparison
NZ_CP068300.1	See Comparison
NZ_CP091815.1	See Comparison
NZ_ON261190.1	See Comparison
NC_021078.1	See Comparison
CP034202.2	See Comparison
NZ_CP126769.1	See Comparison
NZ_CP126790.1	See Comparison
NZ_CP137356.1	See Comparison
NZ_CP141907.1	See Comparison
NZ_CP068918.1	See Comparison
NZ_CP068574.1	See Comparison
NZ_CP064115.1	See Comparison
NZ_CP068940.1	See Comparison
NZ_CP091815.1	See Comparison
NZ_CP068941.1	See Comparison
NZ_CP068915.1	See Comparison
NZ_CP068299.1	See Comparison
NZ_CP068301.1	See Comparison
NZ_CP068300.1	See Comparison
NC_021078.1	See Comparison
NZ_ON261190.1	See Comparison
NZ_CP137377.1	See Comparison
CP034202.2	See Comparison
NZ_CP137356.1	See Comparison
NZ_CP068941.1	See Comparison
NZ_CP126769.1	See Comparison
NZ_CP126790.1	See Comparison
NZ_CP141907.1	See Comparison
NZ_CP068574.1	See Comparison
NZ_CP064115.1	See Comparison
NZ_CP068918.1	See Comparison
NZ_CP068940.1	See Comparison
NZ_CP068301.1	See Comparison
NZ_CP068915.1	See Comparison
NZ_CP068300.1	See Comparison
NZ_CP091815.1	See Comparison
NZ_CP068299.1	See Comparison
NC_021078.1	See Comparison
NZ_ON261190.1	See Comparison
NZ_CP141907.1	See Comparison
CP034202.2	See Comparison
NZ_CP137377.1	See Comparison
NZ_CP137356.1	See Comparison
NZ_CP126769.1	See Comparison
NZ_CP126790.1	See Comparison
NZ_CP068940.1	See Comparison
NZ_CP068574.1	See Comparison
NZ_CP064115.1	See Comparison
NZ_CP068918.1	See Comparison
NZ_CP068941.1	See Comparison
NZ_CP068915.1	See Comparison
NZ_CP068301.1	See Comparison
NZ_CP068300.1	See Comparison
NZ_ON261190.1	See Comparison
NZ_CP068299.1	See Comparison
NZ_CP091815.1	See Comparison
CP034202.2	See Comparison
NC_021078.1	See Comparison
NZ_CP137377.1	See Comparison
NZ_CP137356.1	See Comparison
NZ_CP068574.1	See Comparison
NZ_CP126769.1	See Comparison
NZ_CP126790.1	See Comparison
NZ_CP141907.1	See Comparison
NZ_CP064115.1	See Comparison
NZ_CP068918.1	See Comparison
NZ_CP068940.1	See Comparison
NZ_CP068941.1	See Comparison
NZ_CP068915.1	See Comparison
NZ_CP068299.1	See Comparison
NZ_CP068301.1	See Comparison
NZ_CP068300.1	See Comparison
NZ_CP091815.1	See Comparison
NZ_ON261190.1	See Comparison
NC_021078.1	See Comparison
NZ_CP137377.1	See Comparison
CP034202.2	See Comparison
NZ_CP137356.1	See Comparison
NZ_CP141907.1	See Comparison
NZ_CP126769.1	See Comparison
NZ_CP126790.1	See Comparison
NZ_CP068915.1	See Comparison
NZ_CP068574.1	See Comparison
NZ_CP064115.1	See Comparison
NZ_CP068918.1	See Comparison
NZ_CP068940.1	See Comparison
NZ_CP068941.1	See Comparison
NZ_CP068299.1	See Comparison
NZ_CP068301.1	See Comparison
NZ_CP068300.1	See Comparison
NZ_CP091815.1	See Comparison
NZ_ON261190.1	See Comparison
NC_021078.1	See Comparison
CP034202.2	See Comparison
NZ_CP126769.1	See Comparison
NZ_CP137377.1	See Comparison
NZ_CP137356.1	See Comparison
NZ_CP126790.1	See Comparison
NZ_CP064115.1	See Comparison
NZ_CP141907.1	See Comparison
NZ_CP068918.1	See Comparison
NZ_CP068574.1	See Comparison
NZ_CP068940.1	See Comparison
NZ_CP068941.1	See Comparison
NC_021078.1	See Comparison
NZ_CP068915.1	See Comparison
NZ_CP068299.1	See Comparison
NZ_CP068301.1	See Comparison
NZ_CP068300.1	See Comparison
NZ_CP091815.1	See Comparison
NZ_ON261190.1	See Comparison
CP034202.2	See Comparison

Identical Plasmids

100% Sequence Identity

NZ_CP068301.1

Sequence

Accession: NZ_CP068301.1
Description: Klebsiella pneumoniae strain RIVM_C016538 plasmid pRIVM_C016538_2, complete sequence
Source: refseq
Created at NCBI: Jan. 26, 2021

Host Taxonomy

Assigned Host: Klebsiella pneumoniae (573)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Klebsiella (570)
Species : Klebsiella_pneumoniae (573)
Strain:

Biosample

Accession: 17304620

GEOGRAPHICAL INFORMATION

Original Query: Netherlands
Original Query Type: name
Address: Netherlands
Coordinates (Lat/Lon): 52.24/5.53

ECOSYSTEM

Original Query: Homo sapiens,Plasmid
Classification: cell_culture,host_associated
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

NZ_CP068300.1

Sequence

Accession: NZ_CP068300.1
Description: Klebsiella pneumoniae strain RIVM_C016552 plasmid pRIVM_C016552_2, complete sequence
Source: refseq
Created at NCBI: Jan. 26, 2021

Host Taxonomy

Assigned Host: Klebsiella pneumoniae (573)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Klebsiella (570)
Species : Klebsiella_pneumoniae (573)
Strain:

Biosample

Accession: 17304621

GEOGRAPHICAL INFORMATION

Original Query: Netherlands
Original Query Type: name
Address: Netherlands
Coordinates (Lat/Lon): 52.24/5.53

ECOSYSTEM

Original Query: Homo sapiens,Plasmid
Classification: cell_culture,host_associated
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

Plasmid Visualization

Grays

Blues

Purples

Reds

Oranges

Greens

100

Hex

Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	aph(6)-Id		copy
amrfinderplus	aph(3'')-Ib		copy
amrfinderplus	blaCTX-M-14		copy
amrfinderplus	blaOXA-48		copy
PGAG	repA		copy
PGAG	dqlB		copy
PGAG	conjugal transfer protein TrbC		copy
PGAG	DsbC family protein		copy
PGAG	hypothetical protein		copy
PGAG	lytic transglycosylase domain-containing protein		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 96 entries

…

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Loading...
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Loading...
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

Loading...
NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

relaxase	NC_004464_00056	MOBP	45902	47878	plus	99.697	100	0	1378
mate-pair-formation	NC_004464_00105	MPF_I	2428	4512	minus	99.424	100	0	1407
mate-pair-formation	NC_005246_00057	MPF_I	48434	49168	plus	99.592	95	2.02e-162	505
mate-pair-formation	NC_019063_00094	MPF_I	53933	54442	plus	99.412	100	1.74e-108	346
mate-pair-formation	NC_019344_00078	MPF_I	55108	55818	plus	99.156	100	2.03e-129	409
mate-pair-formation	NC_004464_00066	MPF_I	55830	56978	plus	99.739	100	0	648
mate-pair-formation	NC_004464_00068	MPF_I	58354	59055	plus	94.872	100	5.559999999999996e-128	405
mate-pair-formation	NC_019154_00069	MPF_I	59082	59609	plus	100	100	8.71e-100	321
mate-pair-formation	NC_005246_00069	MPF_I	59629	60015	plus	99.225	100	4.78e-65	219
mate-pair-formation	NC_004464_00073	MPF_I	63602	64807	plus	100	100	0	783
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 10 of 11 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

Loading...
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2