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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP068302.1
Sequence
Nucleotide Information
Accession
NZ_CP068302.1
Description
Klebsiella pneumoniae strain RIVM_C016525 plasmid pRIVM_C016525_2, complete sequence
Source
refseq
Topology
circular
Length
69628 bp
GC Content
0.51 %
Created at NCBI
Jan. 26, 2021
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Klebsiella pneumoniae (573)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Klebsiella (570)
Species
Klebsiella_pneumoniae (573)
Strain
Biosample
Curated Collection Information
Accession
17304619
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Netherlands
Original Query Type
name
Coordinates (Lat/Lon)
52.24/5.53
Address
Netherlands
ECOSYSTEM
Original Query
Homo sapiens,Plasmid
Classification
cell_culture,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Expand all
Similar Plasmids
based on Mash distance
NC_021078.1
See Comparison
NZ_CP068918.1
See Comparison
CP034202.2
See Comparison
NZ_CP137377.1
See Comparison
NZ_CP137356.1
See Comparison
NZ_CP126769.1
See Comparison
NZ_CP126790.1
See Comparison
NZ_CP141907.1
See Comparison
NZ_CP068574.1
See Comparison
NZ_CP064115.1
See Comparison
NZ_CP068940.1
See Comparison
NZ_CP068941.1
See Comparison
NZ_ON261190.1
See Comparison
NZ_CP068915.1
See Comparison
NZ_CP068299.1
See Comparison
NZ_CP068301.1
See Comparison
NZ_CP068300.1
See Comparison
NZ_CP091815.1
See Comparison
NZ_CP137377.1
See Comparison
NC_021078.1
See Comparison
CP034202.2
See Comparison
NZ_CP137356.1
See Comparison
NZ_CP068918.1
See Comparison
NZ_CP141907.1
See Comparison
NZ_CP068574.1
See Comparison
NZ_CP064115.1
See Comparison
NZ_CP126769.1
See Comparison
NZ_CP126790.1
See Comparison
NZ_CP068940.1
See Comparison
NZ_ON261190.1
See Comparison
NZ_CP068941.1
See Comparison
NZ_CP068915.1
See Comparison
NZ_CP068299.1
See Comparison
NZ_CP068301.1
See Comparison
NZ_CP068300.1
See Comparison
NZ_CP091815.1
See Comparison
NZ_CP126769.1
See Comparison
NC_021078.1
See Comparison
CP034202.2
See Comparison
NZ_CP137377.1
See Comparison
NZ_CP137356.1
See Comparison
NZ_CP126790.1
See Comparison
NZ_CP068918.1
See Comparison
NZ_CP068574.1
See Comparison
NZ_CP064115.1
See Comparison
NZ_CP141907.1
See Comparison
NZ_CP068940.1
See Comparison
NZ_CP068941.1
See Comparison
NC_021078.1
See Comparison
NZ_CP068915.1
See Comparison
NZ_CP068299.1
See Comparison
NZ_CP068301.1
See Comparison
NZ_CP068300.1
See Comparison
NZ_CP091815.1
See Comparison
NZ_ON261190.1
See Comparison
NZ_CP126769.1
See Comparison
NZ_CP137377.1
See Comparison
NZ_CP137356.1
See Comparison
CP034202.2
See Comparison
NZ_CP126790.1
See Comparison
NZ_CP068918.1
See Comparison
NZ_CP141907.1
See Comparison
NZ_CP068574.1
See Comparison
NZ_CP064115.1
See Comparison
NZ_CP091815.1
See Comparison
NZ_CP068915.1
See Comparison
NZ_CP068299.1
See Comparison
NZ_CP068302.1
See Comparison
NZ_CP068301.1
See Comparison
NZ_CP068300.1
See Comparison
NZ_CP068940.1
See Comparison
NZ_CP068941.1
See Comparison
NC_021078.1
See Comparison
NZ_ON261190.1
See Comparison
NZ_CP137377.1
See Comparison
CP034202.2
See Comparison
NZ_CP137356.1
See Comparison
NZ_CP141907.1
See Comparison
NZ_CP126769.1
See Comparison
NZ_CP126790.1
See Comparison
NZ_CP068940.1
See Comparison
NZ_CP068574.1
See Comparison
NZ_CP064115.1
See Comparison
NZ_CP068918.1
See Comparison
NZ_CP068299.1
See Comparison
NZ_CP068941.1
See Comparison
NZ_CP068915.1
See Comparison
NZ_CP068301.1
See Comparison
NZ_CP068300.1
See Comparison
NZ_CP091815.1
See Comparison
NZ_ON261190.1
See Comparison
NC_021078.1
See Comparison
NZ_CP126769.1
See Comparison
NZ_CP137377.1
See Comparison
NZ_CP137356.1
See Comparison
CP034202.2
See Comparison
NZ_CP126790.1
See Comparison
NZ_CP068574.1
See Comparison
NZ_CP141907.1
See Comparison
NZ_CP064115.1
See Comparison
NZ_CP068940.1
See Comparison
NZ_CP068299.1
See Comparison
NZ_CP068915.1
See Comparison
NZ_CP068918.1
See Comparison
NZ_CP068941.1
See Comparison
NZ_CP068301.1
See Comparison
NZ_CP068300.1
See Comparison
NZ_ON261190.1
See Comparison
NZ_CP091815.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_CP068301.1
Sequence
Accession
:
NZ_CP068301.1
Description
: Klebsiella pneumoniae strain RIVM_C016538 plasmid pRIVM_C016538_2, complete sequence
Source
: refseq
Created at NCBI
: Jan. 26, 2021
Host Taxonomy
Assigned Host
:
Klebsiella pneumoniae (573)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Klebsiella (570)
Species
:
Klebsiella_pneumoniae (573)
Strain
:
Biosample
Accession
:
17304620
GEOGRAPHICAL INFORMATION
Original Query
: Netherlands
Original Query Type
: name
Address
: Netherlands
Coordinates
(Lat/Lon): 52.24/5.53
ECOSYSTEM
Original Query
: Homo sapiens,Plasmid
Classification
: cell_culture,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP068300.1
Sequence
Accession
:
NZ_CP068300.1
Description
: Klebsiella pneumoniae strain RIVM_C016552 plasmid pRIVM_C016552_2, complete sequence
Source
: refseq
Created at NCBI
: Jan. 26, 2021
Host Taxonomy
Assigned Host
:
Klebsiella pneumoniae (573)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Klebsiella (570)
Species
:
Klebsiella_pneumoniae (573)
Strain
:
Biosample
Accession
:
17304621
GEOGRAPHICAL INFORMATION
Original Query
: Netherlands
Original Query Type
: name
Address
: Netherlands
Coordinates
(Lat/Lon): 52.24/5.53
ECOSYSTEM
Original Query
: Homo sapiens,Plasmid
Classification
: cell_culture,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore