Plasmid NZ_CP068301.1

Sequence

Nucleotide Information

Accession NZ_CP068301.1
Description Klebsiella pneumoniae strain RIVM_C016538 plasmid pRIVM_C016538_2, complete sequence
Source refseq
Topology circular
Length 69628 bp
GC Content 0.51 %
Created at NCBI Jan. 26, 2021



Biosample

Curated Collection Information
Accession 17304620

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Netherlands
Original Query Type name
Coordinates (Lat/Lon) 52.24/5.53
Address Netherlands

ECOSYSTEM
Original Query Homo sapiens,Plasmid
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP068299.1 See Comparison
NZ_CP068302.1 See Comparison
NZ_CP068301.1 See Comparison
NZ_CP068300.1 See Comparison
NZ_CP091815.1 See Comparison
NZ_ON261190.1 See Comparison
NC_021078.1 See Comparison
NZ_CP141907.1 See Comparison
CP034202.2 See Comparison
NZ_CP137377.1 See Comparison
NZ_CP137356.1 See Comparison
NZ_CP126769.1 See Comparison
NZ_CP126790.1 See Comparison
NZ_CP068940.1 See Comparison
NZ_CP068918.1 See Comparison
NZ_CP068574.1 See Comparison
NZ_CP064115.1 See Comparison
NZ_CP068941.1 See Comparison
NZ_CP068299.1 See Comparison
NZ_CP068915.1 See Comparison
NZ_CP068302.1 See Comparison
NZ_CP068300.1 See Comparison
NZ_ON261190.1 See Comparison
NZ_CP091815.1 See Comparison
NC_021078.1 See Comparison
NZ_CP068918.1 See Comparison
NZ_CP126769.1 See Comparison
NZ_CP126790.1 See Comparison
NZ_CP068574.1 See Comparison
NZ_CP064115.1 See Comparison
CP034202.2 See Comparison
NZ_CP137377.1 See Comparison
NZ_CP137356.1 See Comparison
NZ_CP141907.1 See Comparison
CP034202.2 See Comparison
NZ_CP068915.1 See Comparison
NZ_CP068302.1 See Comparison
NZ_CP068300.1 See Comparison
NZ_CP091815.1 See Comparison
NZ_CP068940.1 See Comparison
NZ_CP068941.1 See Comparison
NZ_CP068299.1 See Comparison
NZ_ON261190.1 See Comparison
NC_021078.1 See Comparison
NZ_CP126769.1 See Comparison
NZ_CP137377.1 See Comparison
NZ_CP137356.1 See Comparison
NZ_CP126790.1 See Comparison
NZ_CP068574.1 See Comparison
NZ_CP141907.1 See Comparison
NZ_CP064115.1 See Comparison
NZ_CP068915.1 See Comparison
NZ_CP068918.1 See Comparison
NZ_CP068940.1 See Comparison
NZ_CP068302.1 See Comparison
NZ_CP068941.1 See Comparison
NZ_CP068300.1 See Comparison
NZ_CP091815.1 See Comparison
NZ_CP068299.1 See Comparison
NZ_CP137377.1 See Comparison
NZ_ON261190.1 See Comparison
NC_021078.1 See Comparison
CP034202.2 See Comparison
NZ_CP137356.1 See Comparison
NZ_CP141907.1 See Comparison
NZ_CP126769.1 See Comparison
NZ_CP126790.1 See Comparison
NZ_CP068918.1 See Comparison
NZ_CP068574.1 See Comparison
NZ_CP064115.1 See Comparison
NZ_CP068940.1 See Comparison
NZ_CP068941.1 See Comparison
NZ_CP091815.1 See Comparison
NZ_CP068299.1 See Comparison
NZ_CP068915.1 See Comparison
NZ_CP068302.1 See Comparison
NZ_CP068300.1 See Comparison
CP034202.2 See Comparison
NZ_ON261190.1 See Comparison
NC_021078.1 See Comparison
NZ_CP126769.1 See Comparison
NZ_CP137356.1 See Comparison
NZ_CP137377.1 See Comparison
NZ_CP126790.1 See Comparison
NZ_CP068574.1 See Comparison
NZ_CP141907.1 See Comparison
NZ_CP064115.1 See Comparison
NZ_CP068915.1 See Comparison
NZ_CP068940.1 See Comparison
NZ_CP068918.1 See Comparison
NZ_CP068941.1 See Comparison
NZ_CP091815.1 See Comparison
NZ_CP068299.1 See Comparison
NZ_CP068302.1 See Comparison
NZ_CP068300.1 See Comparison
NZ_CP141907.1 See Comparison
NZ_ON261190.1 See Comparison
CP034202.2 See Comparison
NZ_CP126769.1 See Comparison
NZ_CP126790.1 See Comparison
NC_021078.1 See Comparison
NZ_CP137377.1 See Comparison
NZ_CP137356.1 See Comparison
NZ_CP064115.1 See Comparison
NZ_CP068574.1 See Comparison
NZ_CP068918.1 See Comparison
NZ_CP068915.1 See Comparison
NZ_CP068940.1 See Comparison
NZ_CP068941.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore