Plasmid NZ_CP066665.1

Sequence

Nucleotide Information

Accession NZ_CP066665.1
Description Enterococcus faecium strain Dallas 155 plasmid p6, complete sequence
Source refseq
Topology circular
Length 5212 bp
GC Content 0.34 %
Created at NCBI Dec. 30, 2020



Assembly

Genome Data Information

Accession GCF_016415505.1
Assembly Coverage 108


Biosample

Curated Collection Information
Accession 17038106

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,Dallas
Original Query Type name
Coordinates (Lat/Lon) 32.78/-96.80
Address USA,Dallas

ECOSYSTEM
Original Query Homo sapiens,cell culture,rectal swab
Classification cell_culture,gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP131830.1 See Comparison
NZ_CP131799.1 See Comparison
NZ_CP131852.1 See Comparison
NZ_CP066478.1 See Comparison
NZ_CP066464.1 See Comparison
NZ_CP062274.1 See Comparison
NZ_CP059752.1 See Comparison
NZ_CP059745.1 See Comparison
NZ_CP131830.1 See Comparison
NZ_CP072716.1 See Comparison
NZ_CP131799.1 See Comparison
NZ_CP131852.1 See Comparison
NZ_CP059802.1 See Comparison
NZ_CP059821.1 See Comparison
NZ_CP059752.1 See Comparison
NZ_CP066478.1 See Comparison
NZ_CP066464.1 See Comparison
NZ_CP062274.1 See Comparison
NZ_CP059802.1 See Comparison
NZ_CP059821.1 See Comparison
NZ_CP059745.1 See Comparison
NZ_CP072716.1 See Comparison
NZ_CP059752.1 See Comparison
NZ_CP131830.1 See Comparison
NZ_CP131799.1 See Comparison
NZ_CP131852.1 See Comparison
NZ_CP066478.1 See Comparison
NZ_CP066464.1 See Comparison
NZ_CP062274.1 See Comparison
NZ_CP059745.1 See Comparison
NZ_CP072716.1 See Comparison
NZ_CP059802.1 See Comparison
NZ_CP059821.1 See Comparison
NZ_CP062274.1 See Comparison
NZ_CP131830.1 See Comparison
NZ_CP131799.1 See Comparison
NZ_CP131852.1 See Comparison
NZ_CP066478.1 See Comparison
NZ_CP066464.1 See Comparison
NZ_CP059802.1 See Comparison
NZ_CP059752.1 See Comparison
NZ_CP059745.1 See Comparison
NZ_CP059821.1 See Comparison
NZ_CP131830.1 See Comparison
NZ_CP072716.1 See Comparison
NZ_CP131799.1 See Comparison
NZ_CP131852.1 See Comparison
NZ_CP059752.1 See Comparison
NZ_CP066478.1 See Comparison
NZ_CP066464.1 See Comparison
NZ_CP062274.1 See Comparison
NZ_CP059745.1 See Comparison
NZ_CP059802.1 See Comparison
NZ_CP059821.1 See Comparison
NZ_CP131830.1 See Comparison
NZ_CP072716.1 See Comparison
NZ_CP131799.1 See Comparison
NZ_CP131852.1 See Comparison
NZ_CP131830.1 See Comparison
NZ_CP059752.1 See Comparison
NZ_CP059745.1 See Comparison
NZ_CP059802.1 See Comparison
NZ_CP059821.1 See Comparison
NZ_CP072716.1 See Comparison
NZ_CP066478.1 See Comparison
NZ_CP066464.1 See Comparison
NZ_CP062274.1 See Comparison
NZ_CP131799.1 See Comparison
NZ_CP131852.1 See Comparison
NZ_CP062274.1 See Comparison
NZ_CP066665.1 See Comparison
NZ_CP066478.1 See Comparison
NZ_CP066464.1 See Comparison
NZ_CP059802.1 See Comparison
NZ_CP059752.1 See Comparison
NZ_CP059745.1 See Comparison
NZ_CP059821.1 See Comparison
NZ_CP072716.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2