Plasmid NZ_CP059752.1

Sequence

Nucleotide Information

Accession NZ_CP059752.1
Description Enterococcus faecium strain A7214 plasmid pA7214_P5, complete sequence
Source refseq
Topology circular
Length 5212 bp
GC Content 0.34 %
Created at NCBI July 31, 2020



Assembly

Genome Data Information

Accession GCF_012933165.2
Assembly Coverage 95.82


Biosample

Curated Collection Information
Accession 14675388

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query India,Vellore
Original Query Type name
Coordinates (Lat/Lon) 12.79/79.00
Address India,Vellore

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Sepsis
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP072716.1 See Comparison
NZ_CP131799.1 See Comparison
NZ_CP131852.1 See Comparison
NZ_CP059802.1 See Comparison
NZ_CP131830.1 See Comparison
NZ_CP059745.1 See Comparison
NZ_CP066665.1 See Comparison
NZ_CP066478.1 See Comparison
NZ_CP066464.1 See Comparison
NZ_CP062274.1 See Comparison
NZ_CP059821.1 See Comparison
NZ_CP072716.1 See Comparison
NZ_CP131830.1 See Comparison
NZ_CP131799.1 See Comparison
NZ_CP131852.1 See Comparison
NZ_CP072716.1 See Comparison
NZ_CP066665.1 See Comparison
NZ_CP066478.1 See Comparison
NZ_CP066464.1 See Comparison
NZ_CP062274.1 See Comparison
NZ_CP059802.1 See Comparison
NZ_CP059821.1 See Comparison
NZ_CP072716.1 See Comparison
NZ_CP131830.1 See Comparison
NZ_CP131799.1 See Comparison
NZ_CP131852.1 See Comparison
NZ_CP066665.1 See Comparison
NZ_CP066478.1 See Comparison
NZ_CP066464.1 See Comparison
NZ_CP062274.1 See Comparison
NZ_CP059745.1 See Comparison
NZ_CP059745.1 See Comparison
NZ_CP059802.1 See Comparison
NZ_CP059821.1 See Comparison
NZ_CP059745.1 See Comparison
NZ_CP131830.1 See Comparison
NZ_CP131799.1 See Comparison
NZ_CP131852.1 See Comparison
NZ_CP066665.1 See Comparison
NZ_CP066478.1 See Comparison
NZ_CP066464.1 See Comparison
NZ_CP062274.1 See Comparison
NZ_CP059802.1 See Comparison
NZ_CP059821.1 See Comparison
NZ_CP072716.1 See Comparison
NZ_CP062274.1 See Comparison
NZ_CP066665.1 See Comparison
NZ_CP066478.1 See Comparison
NZ_CP066464.1 See Comparison
NZ_CP131830.1 See Comparison
NZ_CP131799.1 See Comparison
NZ_CP131852.1 See Comparison
NZ_CP059752.1 See Comparison
NZ_CP059821.1 See Comparison
NZ_CP059745.1 See Comparison
NZ_CP059802.1 See Comparison
NZ_CP131830.1 See Comparison
NZ_CP131799.1 See Comparison
NZ_CP131852.1 See Comparison
NZ_CP066665.1 See Comparison
NZ_CP062274.1 See Comparison
NZ_CP059802.1 See Comparison
NZ_CP072716.1 See Comparison
NZ_CP066478.1 See Comparison
NZ_CP066464.1 See Comparison
NZ_CP059745.1 See Comparison
NZ_CP059821.1 See Comparison


Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore