Plasmid NZ_CP065166.1

Sequence

Nucleotide Information

Accession NZ_CP065166.1
Description Klebsiella variicola strain KPN029 plasmid unnamed4, complete sequence
Source refseq
Topology circular
Length 5783 bp
GC Content 0.47 %
Created at NCBI Nov. 29, 2020



Assembly

Genome Data Information

Accession GCF_015694045.1
Assembly Coverage 101


Biosample

Curated Collection Information
Accession 16685814

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.8136S;144.9631E
Original Query Type coordinates
Coordinates (Lat/Lon) -37.81/144.96
Address 260, Elizabeth Street, East End Theatre District, Melbourne, City of Melbourne, Victoria, 3000, Australia

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query urinary tract infection
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP056387.1 See Comparison
NZ_CP056376.1 See Comparison
NZ_CP056429.1 See Comparison
NZ_CP056535.1 See Comparison
NZ_CP055320.1 See Comparison
NZ_LR890418.1 See Comparison
NZ_LR890682.1 See Comparison
NZ_AP024178.1 See Comparison
NZ_CP065166.1 See Comparison
LR890403.1 See Comparison
NZ_CP056196.1 See Comparison
NZ_CP024492.1 See Comparison
NZ_CP083794.1 See Comparison
NZ_LR890418.1 See Comparison
NZ_CP055320.1 See Comparison
NZ_CP056387.1 See Comparison
NZ_CP056376.1 See Comparison
NZ_CP056429.1 See Comparison
NZ_CP056535.1 See Comparison
NZ_LR890682.1 See Comparison
NZ_AP024178.1 See Comparison
NZ_CP083794.1 See Comparison
NZ_CP056196.1 See Comparison
LR890403.1 See Comparison
NZ_CP056387.1 See Comparison
NZ_CP024492.1 See Comparison
NZ_CP056535.1 See Comparison
NZ_CP056376.1 See Comparison
NZ_CP056429.1 See Comparison
NZ_LR890418.1 See Comparison
NZ_CP055320.1 See Comparison
NZ_LR890682.1 See Comparison
NZ_AP024178.1 See Comparison
NZ_CP056196.1 See Comparison
LR890403.1 See Comparison
NZ_CP056387.1 See Comparison
NZ_CP083794.1 See Comparison
NZ_CP055320.1 See Comparison
NZ_CP024492.1 See Comparison
NZ_CP056376.1 See Comparison
NZ_CP056429.1 See Comparison
NZ_CP056535.1 See Comparison
NZ_LR890418.1 See Comparison
NZ_LR890682.1 See Comparison
NZ_CP083794.1 See Comparison
NZ_AP024178.1 See Comparison
LR890403.1 See Comparison
NZ_CP056196.1 See Comparison
NZ_LR890418.1 See Comparison
NZ_CP024492.1 See Comparison
NZ_CP056387.1 See Comparison
NZ_CP056376.1 See Comparison
NZ_CP056429.1 See Comparison
NZ_CP056535.1 See Comparison
NZ_CP055320.1 See Comparison
NZ_LR890682.1 See Comparison
NZ_AP024178.1 See Comparison
NZ_CP056387.1 See Comparison
LR890403.1 See Comparison
NZ_CP056196.1 See Comparison
NZ_CP083794.1 See Comparison
NZ_CP024492.1 See Comparison
NZ_CP056376.1 See Comparison
NZ_CP056429.1 See Comparison
NZ_CP056535.1 See Comparison
NZ_LR890418.1 See Comparison
NZ_CP055320.1 See Comparison
NZ_LR890682.1 See Comparison
NZ_AP024178.1 See Comparison
NZ_CP056196.1 See Comparison
LR890403.1 See Comparison
NZ_CP024492.1 See Comparison
NZ_CP083794.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore