Plasmid NZ_CP061526.1

Sequence

Nucleotide Information

Accession NZ_CP061526.1
Description Acinetobacter baumannii strain CFSAN093705 plasmid pCFSAN093705, complete sequence
Source refseq
Topology circular
Length 14639 bp
GC Content 0.38 %
Created at NCBI Sept. 26, 2020



Assembly

Genome Data Information

Accession GCF_014705825.1
Assembly Coverage 248


Biosample

Curated Collection Information
Accession 12391537

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,DC
Original Query Type name
Coordinates (Lat/Lon) 38.89/-76.99
Address USA,DC

ECOSYSTEM
Original Query urine
Classification host_associated,urinary_system
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP131952.1 See Comparison
NZ_CP096819.1 See Comparison
NZ_CP125224.1 See Comparison
NZ_CP125226.1 See Comparison
NZ_CP155461.1 See Comparison
NZ_CP155479.1 See Comparison
NZ_CP149834.1 See Comparison
NZ_CP143351.1 See Comparison
NZ_CP140437.1 See Comparison
NZ_CP140433.1 See Comparison
NZ_OP378603.1 See Comparison
NZ_CP155461.1 See Comparison
CP137928.1 See Comparison
CP137933.1 See Comparison
NZ_CP131952.1 See Comparison
NZ_CP096819.1 See Comparison
NZ_CP125224.1 See Comparison
NZ_CP125226.1 See Comparison
NZ_CP140437.1 See Comparison
NZ_CP143351.1 See Comparison
NZ_CP155479.1 See Comparison
NZ_CP149834.1 See Comparison
CP137928.1 See Comparison
NZ_CP140433.1 See Comparison
NZ_OP378603.1 See Comparison
CP137933.1 See Comparison
NZ_CP131952.1 See Comparison
NZ_CP155479.1 See Comparison
NZ_CP155461.1 See Comparison
NZ_CP096819.1 See Comparison
NZ_CP125224.1 See Comparison
NZ_CP125226.1 See Comparison
NZ_CP149834.1 See Comparison
CP137928.1 See Comparison
NZ_CP143351.1 See Comparison
NZ_CP140433.1 See Comparison
NZ_OP378603.1 See Comparison
NZ_CP140437.1 See Comparison
CP137933.1 See Comparison
NZ_CP155461.1 See Comparison
NZ_CP131952.1 See Comparison
NZ_CP096819.1 See Comparison
NZ_CP125224.1 See Comparison
NZ_CP125226.1 See Comparison
NZ_CP061526.1 See Comparison
NZ_CP155479.1 See Comparison
NZ_CP149834.1 See Comparison
NZ_CP140437.1 See Comparison
NZ_CP143351.1 See Comparison
NZ_CP140433.1 See Comparison
NZ_CP131952.1 See Comparison
NZ_OP378603.1 See Comparison
CP137928.1 See Comparison
CP137933.1 See Comparison
NZ_CP155479.1 See Comparison
NZ_CP096819.1 See Comparison
NZ_CP155461.1 See Comparison
NZ_CP125224.1 See Comparison
NZ_CP125226.1 See Comparison
NZ_CP140437.1 See Comparison
NZ_CP149834.1 See Comparison
NZ_CP143351.1 See Comparison
NZ_OP378603.1 See Comparison
NZ_CP140433.1 See Comparison
CP137928.1 See Comparison
CP137933.1 See Comparison
NZ_CP131952.1 See Comparison
NZ_CP155479.1 See Comparison
NZ_CP125224.1 See Comparison
NZ_CP125226.1 See Comparison
NZ_CP096819.1 See Comparison
NZ_CP155461.1 See Comparison
NZ_CP149834.1 See Comparison
NZ_CP140437.1 See Comparison
NZ_CP143351.1 See Comparison
NZ_CP155461.1 See Comparison
NZ_CP125224.1 See Comparison
NZ_CP125226.1 See Comparison
NZ_CP140433.1 See Comparison
NZ_OP378603.1 See Comparison
CP137928.1 See Comparison
CP137933.1 See Comparison
NZ_CP131952.1 See Comparison
NZ_CP096819.1 See Comparison
CP137928.1 See Comparison
NZ_CP143351.1 See Comparison
NZ_CP140433.1 See Comparison
NZ_CP155479.1 See Comparison
NZ_CP149834.1 See Comparison
NZ_CP140437.1 See Comparison
NZ_OP378603.1 See Comparison
CP137933.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2