Plasmid NZ_CP053363.1

Sequence

Nucleotide Information

Accession NZ_CP053363.1
Description Klebsiella pneumoniae strain EGKP6 plasmid pEGKP6.5, complete sequence
Source refseq
Topology circular
Length 3511 bp
GC Content 0.55 %
Created at NCBI Nov. 16, 2022



Assembly

Genome Data Information

Accession GCF_017161155.1
Assembly Coverage 100


Biosample

Curated Collection Information

Accession 14858807

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Egypt,Giza
Original Query Type name
Coordinates (Lat/Lon) 29.99/31.21
Address Egypt,Giza

ECOSYSTEM
Original Query cattle,Pure culture,feces from livestock farm
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization




Similar Plasmids

based on Mash distance

NZ_CP125209.1 See Comparison
NZ_CP125189.1 See Comparison
NZ_CP125125.1 See Comparison
NZ_CP125179.1 See Comparison
NZ_CP125151.1 See Comparison
NZ_CP125144.1 See Comparison
NZ_CP125165.1 See Comparison
NZ_CP125200.1 See Comparison
NZ_CP125131.1 See Comparison
NZ_CP125137.1 See Comparison
NZ_CP125120.1 See Comparison
CP125158.1 See Comparison
CP052532.1 See Comparison
CP052368.1 See Comparison
CP052550.1 See Comparison
CP052543.1 See Comparison
CP052378.1 See Comparison
CP052335.1 See Comparison
NZ_CP046652.1 See Comparison
NZ_CP063022.1 See Comparison
NZ_CP074533.1 See Comparison
NZ_CP048783.1 See Comparison
NZ_CP048805.1 See Comparison
NZ_CP135512.1 See Comparison
NC_019986.1 See Comparison
CP067506.1 See Comparison
NZ_CP089025.1 See Comparison
NZ_CP034043.1 See Comparison
NZ_CP125209.1 See Comparison
NZ_CP125189.1 See Comparison
CP052532.1 See Comparison
NZ_CP125125.1 See Comparison
NZ_CP125179.1 See Comparison
NZ_CP125151.1 See Comparison
NZ_CP125144.1 See Comparison
NZ_CP125165.1 See Comparison
NZ_CP125200.1 See Comparison
NZ_CP125131.1 See Comparison
NZ_CP125137.1 See Comparison
NZ_CP125120.1 See Comparison
CP125158.1 See Comparison
CP052368.1 See Comparison
CP052550.1 See Comparison
CP052543.1 See Comparison
NZ_CP034043.1 See Comparison
CP052378.1 See Comparison
CP052335.1 See Comparison
NZ_CP063022.1 See Comparison
NZ_CP074533.1 See Comparison
NZ_CP089025.1 See Comparison
NZ_CP046652.1 See Comparison
NZ_CP048783.1 See Comparison
NZ_CP048805.1 See Comparison
CP067506.1 See Comparison
NC_019986.1 See Comparison
NZ_CP125209.1 See Comparison
NZ_CP135512.1 See Comparison
NZ_CP125189.1 See Comparison
NZ_CP125131.1 See Comparison
NZ_CP125137.1 See Comparison
NZ_CP125120.1 See Comparison
CP125158.1 See Comparison
NZ_CP125125.1 See Comparison
NZ_CP125179.1 See Comparison
NZ_CP125151.1 See Comparison
NZ_CP125144.1 See Comparison
NZ_CP125165.1 See Comparison
NZ_CP125200.1 See Comparison
NZ_CP074533.1 See Comparison
CP052378.1 See Comparison
CP052335.1 See Comparison
NZ_CP063022.1 See Comparison
CP052532.1 See Comparison
CP052368.1 See Comparison
CP052550.1 See Comparison
CP052543.1 See Comparison
CP067506.1 See Comparison
NZ_CP046652.1 See Comparison
NZ_CP048783.1 See Comparison
NZ_CP048805.1 See Comparison
NC_019986.1 See Comparison
NZ_CP089025.1 See Comparison
NZ_CP125209.1 See Comparison
NZ_CP135512.1 See Comparison
NZ_CP034043.1 See Comparison
NZ_CP125189.1 See Comparison
NZ_CP125125.1 See Comparison
NZ_CP125179.1 See Comparison
NZ_CP125151.1 See Comparison
NZ_CP125144.1 See Comparison
NZ_CP125165.1 See Comparison
NZ_CP125200.1 See Comparison
NZ_CP125131.1 See Comparison
NZ_CP125137.1 See Comparison
NZ_CP125120.1 See Comparison
CP125158.1 See Comparison
CP052532.1 See Comparison
CP052368.1 See Comparison
CP052550.1 See Comparison
CP052543.1 See Comparison
CP052378.1 See Comparison
CP052335.1 See Comparison
NZ_CP046652.1 See Comparison
NZ_CP074533.1 See Comparison
NZ_CP063022.1 See Comparison
NZ_CP048783.1 See Comparison
NZ_CP048805.1 See Comparison
NZ_CP135512.1 See Comparison
NZ_CP089025.1 See Comparison
NC_019986.1 See Comparison
NZ_CP034043.1 See Comparison
CP067506.1 See Comparison
NZ_CP125209.1 See Comparison
NZ_CP125189.1 See Comparison
NZ_CP125125.1 See Comparison
NZ_CP125179.1 See Comparison
NZ_CP125151.1 See Comparison
NZ_CP125144.1 See Comparison
NZ_CP125165.1 See Comparison
NZ_CP125200.1 See Comparison
NZ_CP125131.1 See Comparison
NZ_CP125137.1 See Comparison
NZ_CP125120.1 See Comparison
CP052532.1 See Comparison
CP125158.1 See Comparison
CP052368.1 See Comparison
CP052550.1 See Comparison
CP052335.1 See Comparison
CP052543.1 See Comparison
CP052378.1 See Comparison
NZ_CP074533.1 See Comparison
NZ_CP063022.1 See Comparison
NZ_CP034043.1 See Comparison
CP067506.1 See Comparison
NZ_CP046652.1 See Comparison
NZ_CP048783.1 See Comparison
NZ_CP048805.1 See Comparison
NZ_CP089025.1 See Comparison
NC_019986.1 See Comparison
NZ_CP125144.1 See Comparison
NZ_CP135512.1 See Comparison
NZ_CP125209.1 See Comparison
NZ_CP125189.1 See Comparison
NZ_CP125165.1 See Comparison
NZ_CP125200.1 See Comparison
NZ_CP125131.1 See Comparison
NZ_CP125137.1 See Comparison
NZ_CP125120.1 See Comparison
CP125158.1 See Comparison
NZ_CP125125.1 See Comparison
NZ_CP125179.1 See Comparison
NZ_CP125151.1 See Comparison
CP052532.1 See Comparison
CP052368.1 See Comparison
CP052550.1 See Comparison
CP052543.1 See Comparison
CP052378.1 See Comparison
CP052335.1 See Comparison
NZ_CP135512.1 See Comparison
NZ_CP046652.1 See Comparison
NZ_CP053363.1 See Comparison
NZ_CP048783.1 See Comparison
NZ_CP048805.1 See Comparison
NC_019986.1 See Comparison
NZ_CP063022.1 See Comparison
NZ_CP074533.1 See Comparison
CP067506.1 See Comparison
NZ_CP089025.1 See Comparison
NZ_CP034043.1 See Comparison
NZ_CP125209.1 See Comparison
NZ_CP125189.1 See Comparison
NZ_CP125179.1 See Comparison
NZ_CP125151.1 See Comparison
NZ_CP125144.1 See Comparison
NZ_CP125165.1 See Comparison
NZ_CP125200.1 See Comparison
NZ_CP125131.1 See Comparison
NZ_CP125137.1 See Comparison
NZ_CP125120.1 See Comparison
CP052532.1 See Comparison
NZ_CP125125.1 See Comparison
CP125158.1 See Comparison
CP052550.1 See Comparison
CP052543.1 See Comparison
CP052368.1 See Comparison
CP052378.1 See Comparison
NZ_CP048805.1 See Comparison
CP052335.1 See Comparison
NZ_CP063022.1 See Comparison
NZ_CP074533.1 See Comparison
CP067506.1 See Comparison
NZ_CP046652.1 See Comparison
NZ_CP048783.1 See Comparison
NZ_CP034043.1 See Comparison
NC_019986.1 See Comparison
NZ_CP089025.1 See Comparison
NZ_CP135512.1 See Comparison


Plasmid Visualization


SourceElement Name Display Sequence Favorite
PGAGMbeB family mobilization proteincopy
PGAGMbeD family mobilization/exclusion proteincopy
PGAGhypothetical proteincopy
PGAGMobC family plasmid mobilization relaxosome proteincopy
MOB-typerMOBPcopy
MOB-typerrep_cluster_2335copy
MOB-typerMOBPcopy
MOB-typerMOBPcopy
MOB-typerMOBPcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 9 of 9 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTCP008720MOBP23672541plus1001002.5600000000000002e-86324
repliconEF088686_00008rep_cluster_233518792401minus93.69990782
relaxaseMF168404_00021MOBP1444plus81.081861.13e-64229
relaxaseNC_001848_00006MOBP26472961plus92.453999.860000000000001e-59200
relaxaseNC_019986_00002MOBP29573511plus1001005.169999999999999e-119383
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 5 of 5 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2