Plasmid NZ_CP048805.1
Sequence
Nucleotide Information
| Accession | NZ_CP048805.1 |
|---|---|
| Description | Klebsiella pneumoniae strain EGKP4 plasmid pEGKP4.5, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 3511 bp |
| GC Content | 0.55 % |
| Created at NCBI | Nov. 16, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 14082702 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Egypt,Giza |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 29.99/31.21 |
| Address | Egypt,Giza |
ECOSYSTEM
| Original Query | Homo sapiens,Pure culture,fecal isolate from poultry farm worker |
|---|---|
| Classification | cell_culture,fecal,gastrointestinal_system,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | MbeB family mobilization protein | copy | ||
| PGAG | MbeD family mobilization/exclusion protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | MobC family plasmid mobilization relaxosome protein | copy | ||
| MOB-typer | MOBP | copy | ||
| MOB-typer | rep_cluster_2335 | copy | ||
| MOB-typer | MOBP | copy | ||
| MOB-typer | MOBP | copy | ||
| MOB-typer | MOBP | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 9 of 9 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | CP008720 | MOBP | 2747 | 2921 | plus | 100 | 100 | 2.5600000000000002e-86 | 324 |
| replicon | EF088686_00008 | rep_cluster_2335 | 2259 | 2781 | minus | 93.69 | 99 | 0 | 782 |
| relaxase | NC_019986_00002 | MOBP | 3 | 1349 | plus | 100 | 99 | 0 | 894 |
| relaxase | NC_001848_00006 | MOBP | 3027 | 3341 | plus | 92.453 | 99 | 9.860000000000001e-59 | 200 |
| relaxase | CP041059_00006 | MOBP | 3337 | 3510 | plus | 98.276 | 89 | 4.16e-28 | 118 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 5 of 5 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |