Plasmid NZ_CP050908.1

Sequence

Nucleotide Information

Accession NZ_CP050908.1
Description Acinetobacter baumannii strain DT-Ab022 plasmid unnamed1, complete sequence
Source refseq
Topology circular
Length 110967 bp
GC Content 0.42 %
Created at NCBI April 13, 2020



Assembly

Genome Data Information

Accession GCF_012272735.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 14308866

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 39.9N;116.4E
Original Query Type coordinates
Coordinates (Lat/Lon) 39.90/116.40
Address China Post, Zhengyi Avenue, Donghuamen, 首都功能核心区, Dongcheng District, Beijing, 100010, China

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP061515.1 See Comparison
NZ_CP061518.1 See Comparison
NZ_CP076741.1 See Comparison
NZ_CP076738.1 See Comparison
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NZ_CP074700.1 See Comparison
NZ_CP064195.1 See Comparison
NZ_CP076744.1 See Comparison
NZ_CP064204.1 See Comparison
NZ_CP102581.1 See Comparison
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NZ_CP104752.1 See Comparison
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NZ_CP096732.1 See Comparison
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NZ_CP096723.1 See Comparison
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NZ_CP096770.1 See Comparison
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NZ_CP096697.1 See Comparison
NZ_CP096685.1 See Comparison
NZ_CP096748.1 See Comparison
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NZ_CP096701.1 See Comparison
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NC_020524.1 See Comparison
NZ_CP018257.1 See Comparison
CP015484.1 See Comparison
NZ_CP016301.1 See Comparison
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NZ_CP016296.1 See Comparison
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NZ_CP077827.1 See Comparison
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CP097880.1 See Comparison
NZ_CP096752.1 See Comparison
NZ_CP096728.1 See Comparison
NZ_CP096767.1 See Comparison
NZ_CP096687.1 See Comparison
NZ_CP096765.1 See Comparison
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NZ_CP096748.1 See Comparison
NZ_CP096711.1 See Comparison
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NZ_CP096726.1 See Comparison
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NZ_CP096709.1 See Comparison
NZ_CP096770.1 See Comparison
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NZ_CP096743.1 See Comparison
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NZ_CP016299.1 See Comparison
NZ_CP016296.1 See Comparison
NZ_CP043456.1 See Comparison
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NZ_CP021327.1 See Comparison
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NZ_CP143347.1 See Comparison
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NZ_CP131890.1 See Comparison
NZ_CP131886.1 See Comparison
NZ_CP131904.1 See Comparison
NZ_CP061522.1 See Comparison
NZ_CP050905.1 See Comparison
NZ_CP061524.1 See Comparison
NZ_CP061520.1 See Comparison
NZ_CP061515.1 See Comparison
NZ_CP061518.1 See Comparison
NZ_CP076741.1 See Comparison
NZ_CP076738.1 See Comparison
NZ_CP074697.1 See Comparison
NZ_CP074700.1 See Comparison
NZ_CP064195.1 See Comparison
NZ_CP076744.1 See Comparison
NZ_CP064204.1 See Comparison
NZ_CP102581.1 See Comparison
NZ_CP096752.1 See Comparison
NZ_CP116802.1 See Comparison
CP116443.1 See Comparison
CP116441.1 See Comparison
NZ_CP104752.1 See Comparison
CP097876.1 See Comparison
CP097880.1 See Comparison
NZ_CP077827.1 See Comparison
NZ_CP096767.1 See Comparison
NZ_CP096687.1 See Comparison
NZ_CP096765.1 See Comparison
NZ_CP096697.1 See Comparison
NZ_CP096685.1 See Comparison
NZ_CP096748.1 See Comparison
NZ_CP096711.1 See Comparison
NZ_CP096760.1 See Comparison
NZ_CP096701.1 See Comparison
NZ_CP096728.1 See Comparison
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NZ_CP096726.1 See Comparison
NZ_CP082894.1 See Comparison
NZ_CP096732.1 See Comparison
NZ_CP096723.1 See Comparison
NZ_CP096743.1 See Comparison
NZ_CP096709.1 See Comparison
NZ_CP096770.1 See Comparison
NZ_CP096746.1 See Comparison
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NZ_CP096699.1 See Comparison
NZ_CP094284.1 See Comparison
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NZ_CP075322.1 See Comparison
NZ_CP016301.1 See Comparison
NZ_CP020585.1 See Comparison
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NZ_CP016296.1 See Comparison
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NZ_CP096895.1 See Comparison
NZ_CP024125.1 See Comparison
NZ_CP043456.1 See Comparison
NZ_CP043463.1 See Comparison
NZ_CP043470.1 See Comparison
NZ_CP116804.1 See Comparison
NZ_CP121610.1 See Comparison
NZ_CP131894.1 See Comparison
NZ_CP144239.1 See Comparison
NZ_CP131890.1 See Comparison
NZ_CP131886.1 See Comparison
NZ_CP131904.1 See Comparison
NZ_CP050905.1 See Comparison
NZ_CP143345.1 See Comparison
NZ_CP143347.1 See Comparison
NZ_MK386680.1 See Comparison
NZ_CP076741.1 See Comparison
NZ_CP061522.1 See Comparison
NZ_CP061524.1 See Comparison
NZ_CP061520.1 See Comparison
NZ_CP061515.1 See Comparison
NZ_CP061518.1 See Comparison
NZ_CP076738.1 See Comparison
NZ_CP074697.1 See Comparison
NZ_CP074700.1 See Comparison
NZ_CP064195.1 See Comparison
NZ_CP076744.1 See Comparison
NZ_CP064204.1 See Comparison
NZ_CP116802.1 See Comparison
CP116443.1 See Comparison
NZ_CP102581.1 See Comparison
CP116441.1 See Comparison
NZ_CP104752.1 See Comparison
CP097876.1 See Comparison
CP097880.1 See Comparison
NZ_CP075322.1 See Comparison
NZ_CP096752.1 See Comparison
NZ_CP096728.1 See Comparison
NZ_CP096767.1 See Comparison
NZ_CP096687.1 See Comparison
NZ_CP096765.1 See Comparison
NZ_CP096697.1 See Comparison
NZ_CP082894.1 See Comparison
NZ_MT802099.1 See Comparison
NZ_CP077827.1 See Comparison
NZ_CP096685.1 See Comparison
NZ_CP096748.1 See Comparison
NZ_CP096711.1 See Comparison
NZ_CP096760.1 See Comparison
NZ_CP096701.1 See Comparison
NZ_CP096737.1 See Comparison
NZ_CP096726.1 See Comparison
NZ_CP096732.1 See Comparison
NZ_CP096723.1 See Comparison
NZ_CP096743.1 See Comparison
NZ_CP096709.1 See Comparison
NZ_CP096770.1 See Comparison
NZ_CP096746.1 See Comparison
NZ_CP096721.1 See Comparison
NZ_CP096699.1 See Comparison
NZ_CP094284.1 See Comparison
NZ_CP082888.1 See Comparison
NZ_CP082891.1 See Comparison
NZ_CP020585.1 See Comparison
NZ_CP018257.1 See Comparison
NZ_CP016299.1 See Comparison
NZ_CP016296.1 See Comparison
NZ_CP043456.1 See Comparison
NZ_CP010780.1 See Comparison
NC_020524.1 See Comparison
CP031744.1 See Comparison
NZ_CP024125.1 See Comparison
NZ_CP016301.1 See Comparison
CP015484.1 See Comparison
NZ_CP021327.1 See Comparison
NZ_CP043463.1 See Comparison
NZ_CP043470.1 See Comparison
NZ_CP096895.1 See Comparison
NZ_CP121610.1 See Comparison
NZ_CP116804.1 See Comparison
NZ_CP131894.1 See Comparison
NZ_CP144239.1 See Comparison
NZ_CP131890.1 See Comparison
NZ_CP131886.1 See Comparison
NZ_CP131904.1 See Comparison
NZ_CP143345.1 See Comparison
NZ_CP143347.1 See Comparison
NZ_CP050905.1 See Comparison
NZ_MK386680.1 See Comparison


Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP050905.1
    • Description: Acinetobacter baumannii strain DT-Ab057 plasmid unnamed1, complete sequence
    • Source: refseq
    • Created at NCBI: April 12, 2020

  • Host Taxonomy
    Assigned Host: Acinetobacter baumannii (470)
  • Biosample
    Accession: 14308892
  • GEOGRAPHICAL INFORMATION
    • Original Query: 39.9N;116.4E
    • Original Query Type: coordinates
    • Address: China Post, Zhengyi Avenue, Donghuamen, 首都功能核心区, Dongcheng District, Beijing, 100010, China
    • Coordinates (Lat/Lon): 39.90/116.40
  • ECOSYSTEM
    • Original Query: Homo sapiens,Bronchoalveolar lavage fluid
    • Classification: bronchi,host_associated,respiratory_system
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: infection
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2