Plasmid NZ_CP016301.1

Sequence

Nucleotide Information

Accession NZ_CP016301.1
Description Acinetobacter baumannii strain CMC-CR-MDR-Ab66 plasmid pCMCVTAb1-Ab66, complete sequence
Source refseq
Topology circular
Length 110967 bp
GC Content 0.42 %
Created at NCBI Dec. 28, 2016



Assembly

Genome Data Information

Accession GCF_001922245.1
Assembly Coverage 188


Biosample

Curated Collection Information

Accession 4096370

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.2667N;79.9333W
Original Query Type coordinates
Coordinates (Lat/Lon) 37.27/-79.93
Address 789, 6th Street Southeast, Cedar Bluff, Roanoke, Virginia, 24013, United States

ECOSYSTEM
Original Query Homo sapiens,TA
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 77
Host-associated Sex male

DISEASE
Original Query Acute and Chronic Respiratory Failure,Expired,Acute & chronic respiratory failure, septicemia, malignant neoplasm, acute kidney failure, tobacco use disorder, prediabetes, hyperlipidemia, PVD, COPD
DOID/SYMP
  • Chronic obstructive pulmonary disease (DOID:3083 )
  • An obstructive lung disease that is a chronic and progressive disorder of small airways in the lungs and that is characterized by irreversible airflow obstruction, typically identified by reductions in quantitative spirometric indices, induced forced expiratory volume at 1 second (FEV1) and the ratio of FEV1 to forced vital capacity (less than 0.7 is diagnostic of COPD). Lung volume is increased and pulmonary hypertension may occur. The pathologic changes result in the disruption of the airflow in the bronchial airways. Signs and symptoms include shortness of breath, wheezing, productive cough and chest tightness. COPD is a consequence (an end result) of chronic bronchitis, emphysema or both.
  • Prediabetes syndrome (DOID:11716 )
  • A glucose metabolism disease that is characterized by blood glucose levels are high, but not high enough to be classified as type 2 diabetes.
  • Kidney failure (DOID:1074 )
  • A kidney disease characterized by the failure of the kidneys to adequately filter waste products from the blood.
  • Respiratory failure (DOID:11162 )
  • A lung disease characterized by inadequate gas exchange by the respiratory system.
  • Nicotine dependence (DOID:0050742 )
  • A substance dependence that is characterized by a physical dependence on nicotine.
  • Peripheral vascular disease (DOID:341 )
  • A vascular disease that is characterized by obstruction of larger arteries not within the coronary, aortic arch vasculature, or brain.
  • Lipid metabolism disorder (DOID:3146 )
  • An inherited metabolic disorder that involves the creation and degradation of lipids.
  • Cancer (DOID:162 )
  • A disease of cellular proliferation that is malignant and primary, characterized by uncontrolled cellular proliferation, local cell invasion and metastasis.

Visualization


Plasmids from same Biosample



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based on Mash distance

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Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2