Plasmid NZ_CP050434.1

Sequence

Nucleotide Information

Accession	NZ_CP050434.1
Description	Acinetobacter baumannii strain PM194229 plasmid pPM194229_2, complete sequence
Source	refseq
Topology	circular
Length	10967 bp
GC Content	0.37 %
Created at NCBI	May 2, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Acinetobacter baumannii (470)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Moraxellales (2887326)
Family	Moraxellaceae (468)
Genus	Acinetobacter (469)
Species	Acinetobacter_baumannii (470)
Strain

Assembly

Genome Data Information

Accession	GCF_012935125.1
Assembly Coverage	185.349

Biosample

Curated Collection Information

Accession	14422682

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	28.5659N;77.2111E
Original Query Type	coordinates
Coordinates (Lat/Lon)	28.57/77.21
Address	All India Institute of Medical Sciences (AIIMS), New Delhi, Gautam Nagar Road, Yusuf Sarai Market, Yusuf Sarai, New Delhi, Defence Colony Tehsil, South East Delhi District, Delhi, 110029, India

ECOSYSTEM

Original Query	Homo sapiens,BAL
Classification	host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	pneumonia
DOID/SYMP	Pneumonia (DOID:552 ) A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP041589.1	See Comparison
NZ_CP040427.1	See Comparison
NZ_CP035048.1	See Comparison
NZ_CP035053.1	See Comparison
CP031745.1	See Comparison
NZ_CP096898.1	See Comparison
NZ_CP106990.1	See Comparison
NZ_KM051986.1	See Comparison
NZ_CP067103.1	See Comparison
NZ_CP102582.1	See Comparison
NZ_CP040427.1	See Comparison
CP081142.1	See Comparison
CP081147.1	See Comparison
NZ_CP041589.1	See Comparison
NZ_CP096898.1	See Comparison
CP031745.1	See Comparison
NZ_CP035048.1	See Comparison
NZ_CP035053.1	See Comparison
NZ_KM051986.1	See Comparison
NZ_CP106990.1	See Comparison
NZ_CP067103.1	See Comparison
NZ_CP102582.1	See Comparison
CP031745.1	See Comparison
NZ_CP040427.1	See Comparison
NZ_CP035048.1	See Comparison
NZ_CP035053.1	See Comparison
CP081142.1	See Comparison
CP081147.1	See Comparison
NZ_CP041589.1	See Comparison
NZ_KM051986.1	See Comparison
NZ_CP096898.1	See Comparison
CP031745.1	See Comparison
NZ_CP067103.1	See Comparison
NZ_CP102582.1	See Comparison
NZ_CP040427.1	See Comparison
NZ_CP035048.1	See Comparison
NZ_CP035053.1	See Comparison
NZ_CP106990.1	See Comparison
CP081142.1	See Comparison
CP081147.1	See Comparison
NZ_CP041589.1	See Comparison
NZ_CP096898.1	See Comparison
NZ_CP106990.1	See Comparison
NZ_CP067103.1	See Comparison
NZ_KM051986.1	See Comparison
NZ_CP102582.1	See Comparison
NZ_CP041589.1	See Comparison
CP081142.1	See Comparison
CP081147.1	See Comparison
NZ_CP067103.1	See Comparison
CP031745.1	See Comparison
NZ_CP096898.1	See Comparison
NZ_CP040427.1	See Comparison
NZ_CP035048.1	See Comparison
NZ_CP035053.1	See Comparison
NZ_KM051986.1	See Comparison
CP081142.1	See Comparison
NZ_CP102582.1	See Comparison
NZ_CP106990.1	See Comparison
CP081147.1	See Comparison
NZ_CP041589.1	See Comparison
NZ_CP096898.1	See Comparison
CP031745.1	See Comparison
NZ_CP040427.1	See Comparison
NZ_CP035048.1	See Comparison
NZ_CP035053.1	See Comparison
NZ_KM051986.1	See Comparison
NZ_CP067103.1	See Comparison
NZ_CP050434.1	See Comparison
NZ_CP102582.1	See Comparison
CP081142.1	See Comparison
NZ_CP106990.1	See Comparison
CP081147.1	See Comparison
NZ_CP041589.1	See Comparison
NZ_CP096898.1	See Comparison
NZ_CP040427.1	See Comparison
NZ_CP035048.1	See Comparison
NZ_CP035053.1	See Comparison
CP031745.1	See Comparison
NZ_KM051986.1	See Comparison
NZ_CP102582.1	See Comparison
NZ_CP067103.1	See Comparison
CP081142.1	See Comparison
CP081147.1	See Comparison
NZ_CP106990.1	See Comparison

Identical Plasmids

100% Sequence Identity

NZ_CP040427.1

Sequence

Accession: NZ_CP040427.1
Description: Acinetobacter baumannii strain PB364 plasmid pPB364_2, complete sequence
Source: refseq
Created at NCBI: May 27, 2019

Host Taxonomy

Assigned Host: Acinetobacter baumannii (470)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Moraxellales (2887326)
Family : Moraxellaceae (468)
Genus : Acinetobacter (469)
Species : Acinetobacter_baumannii (470)
Strain:

Biosample

Accession: 11660471

GEOGRAPHICAL INFORMATION

Original Query: USA,Valhalla
Original Query Type: name
Address: USA,Valhalla
Coordinates (Lat/Lon): 41.07/-73.78

ECOSYSTEM

Original Query: Homo sapiens,whole organism
Classification: host_associated
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

NZ_CP035053.1

Sequence

Accession: NZ_CP035053.1
Description: Acinetobacter baumannii strain ABUH763 plasmid p11.0Kbp, complete sequence
Source: refseq
Created at NCBI: Jan. 26, 2019

Host Taxonomy

Assigned Host: Acinetobacter baumannii (470)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Moraxellales (2887326)
Family : Moraxellaceae (468)
Genus : Acinetobacter (469)
Species : Acinetobacter_baumannii (470)
Strain:

Biosample

Accession: 5238628

GEOGRAPHICAL INFORMATION

Original Query: 40.5N;82.5W
Original Query Type: coordinates
Address: 13485, Armentrout Road, South Bay, Berlin Township, Knox County, Ohio, 43019, United States
Coordinates (Lat/Lon): 40.50/-82.50

ECOSYSTEM

Original Query: Homo sapiens
Classification: host_associated
Host-associated Taxon:
- Homo sapiens (9606)

DISEASE

Original Query: pneumoniae
DOID/SYMP:
- Pneumonia (DOID:552 )

Visualization

NZ_CP102582.1

Sequence

Accession: NZ_CP102582.1
Description: Acinetobacter baumannii strain A9844 plasmid p2A9844, complete sequence
Source: refseq
Created at NCBI: Feb. 23, 2023

Host Taxonomy

Assigned Host: Acinetobacter baumannii (470)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Moraxellales (2887326)
Family : Moraxellaceae (468)
Genus : Acinetobacter (469)
Species : Acinetobacter_baumannii (470)
Strain:

Biosample

Accession: 30174926

GEOGRAPHICAL INFORMATION

Original Query: None
Original Query Type: None
Address: None
Coordinates (Lat/Lon):

ECOSYSTEM

Original Query: Homo sapiens,whole organism
Classification: host_associated
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

CP081147.1

Sequence

Accession: CP081147.1
Description: Acinetobacter baumannii strain ARLG_6295 plasmid pARLG_6205_3
Source: insd
Created at NCBI: Aug. 26, 2021

Host Taxonomy

Assigned Host: Acinetobacter baumannii (470)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Moraxellales (2887326)
Family : Moraxellaceae (468)
Genus : Acinetobacter (469)
Species : Acinetobacter_baumannii (470)
Strain:

Biosample

Accession: 16351083

GEOGRAPHICAL INFORMATION

Original Query: 41.50N;81.62W
Original Query Type: coordinates
Address: Cleveland Clinic, 9500, Euclid Avenue, Fairfax, Cleveland, Cuyahoga County, Ohio, 44195, United States
Coordinates (Lat/Lon): 41.50/-81.62

ECOSYSTEM

Original Query: Homo sapiens,respiratory
Classification: host_associated,respiratory_system
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

CP081142.1

Sequence

Accession: CP081142.1
Description: Acinetobacter baumannii strain ARLG_6344 plasmid pARLG_6344_3
Source: insd
Created at NCBI: Aug. 26, 2021

Host Taxonomy

Assigned Host: Acinetobacter baumannii (470)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Moraxellales (2887326)
Family : Moraxellaceae (468)
Genus : Acinetobacter (469)
Species : Acinetobacter_baumannii (470)
Strain:

Biosample

Accession: 16351130

GEOGRAPHICAL INFORMATION

Original Query: 41.50N;81.62W
Original Query Type: coordinates
Address: Cleveland Clinic, 9500, Euclid Avenue, Fairfax, Cleveland, Cuyahoga County, Ohio, 44195, United States
Coordinates (Lat/Lon): 41.50/-81.62

ECOSYSTEM

Original Query: Homo sapiens,blood
Classification: blood,circulatory_system,host_associated
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2