Plasmid NZ_CP049974.1

Sequence

Nucleotide Information

Accession NZ_CP049974.1
Description Escherichia coli strain ARL09/232 plasmid pCO_Eco4457-7, complete sequence
Source refseq
Topology circular
Length 1934 bp
GC Content 0.51 %
Created at NCBI June 30, 2020



Assembly

Genome Data Information

Accession GCF_013376575.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 14351533

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query New Zealand
Original Query Type name
Coordinates (Lat/Lon) -41.50/172.83
Address New Zealand

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP056550.1 See Comparison
NZ_CP017225.1 See Comparison
NZ_CP146570.1 See Comparison
NZ_CP146559.1 See Comparison
NZ_CP058143.1 See Comparison
NZ_CP043412.1 See Comparison
NZ_AP022670.1 See Comparison
NZ_KM107839.1 See Comparison
NZ_CP097197.1 See Comparison
NZ_CP060079.1 See Comparison
NZ_CP056255.1 See Comparison
NZ_CP146570.1 See Comparison
NZ_CP017225.1 See Comparison
NZ_CP146559.1 See Comparison
NZ_CP097197.1 See Comparison
NZ_CP056550.1 See Comparison
NZ_CP058143.1 See Comparison
NZ_CP043412.1 See Comparison
NZ_KM107839.1 See Comparison
NZ_AP022670.1 See Comparison
NZ_CP060079.1 See Comparison
NZ_CP056255.1 See Comparison
NZ_CP146570.1 See Comparison
NZ_CP017225.1 See Comparison
NZ_CP146559.1 See Comparison
NZ_CP043412.1 See Comparison
NZ_CP058143.1 See Comparison
NZ_CP056550.1 See Comparison
NZ_CP056550.1 See Comparison
NZ_AP022670.1 See Comparison
NZ_CP017225.1 See Comparison
NZ_KM107839.1 See Comparison
NZ_CP060079.1 See Comparison
NZ_CP056255.1 See Comparison
NZ_CP097197.1 See Comparison
NZ_CP146570.1 See Comparison
NZ_CP146559.1 See Comparison
NZ_CP060079.1 See Comparison
NZ_CP058143.1 See Comparison
NZ_CP043412.1 See Comparison
NZ_AP022670.1 See Comparison
NZ_KM107839.1 See Comparison
NZ_CP097197.1 See Comparison
NZ_CP056255.1 See Comparison
NZ_CP017225.1 See Comparison
NZ_CP146570.1 See Comparison
NZ_CP146559.1 See Comparison
NZ_CP058143.1 See Comparison
NZ_CP056550.1 See Comparison
NZ_AP022670.1 See Comparison
NZ_CP043412.1 See Comparison
NZ_KM107839.1 See Comparison
NZ_CP060079.1 See Comparison
NZ_CP058143.1 See Comparison
NZ_CP097197.1 See Comparison
NZ_CP146570.1 See Comparison
NZ_CP056255.1 See Comparison
NZ_CP017225.1 See Comparison
NZ_CP146559.1 See Comparison
NZ_CP056550.1 See Comparison
NZ_CP049974.1 See Comparison
NZ_CP043412.1 See Comparison
NZ_AP022670.1 See Comparison
NZ_CP060079.1 See Comparison
NZ_CP056255.1 See Comparison
NZ_CP097197.1 See Comparison
NZ_KM107839.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore