Plasmid NZ_CP043412.1

Sequence

Nucleotide Information

Accession NZ_CP043412.1
Description Escherichia coli strain NMBU-W13E19 plasmid pNMBU-W13E19_06, complete sequence
Source refseq
Topology circular
Length 1934 bp
GC Content 0.51 %
Created at NCBI June 7, 2020



Assembly

Genome Data Information

Accession GCF_013282335.1
Assembly Coverage 98


Biosample

Curated Collection Information
Accession 12640810

PLASMID INFORMATION
Genotype ST69
BIOSAMPLE_pathotype UPEC

GEOGRAPHICAL INFORMATION
Original Query 59.667N;10.769E
Original Query Type coordinates
Coordinates (Lat/Lon) 59.67/10.77
Address Universitetstunet, Pentagon, Ås, Viken, 1433, Norway

ECOSYSTEM
Original Query surface water
Classification aquatic
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP017225.1 See Comparison
NZ_CP049974.1 See Comparison
NZ_CP146570.1 See Comparison
NZ_CP146559.1 See Comparison
CP132213.1 See Comparison
NZ_CP056550.1 See Comparison
NZ_KM107839.1 See Comparison
NZ_CP017225.1 See Comparison
NZ_CP060079.1 See Comparison
NZ_CP056255.1 See Comparison
NZ_CP097197.1 See Comparison
CP132213.1 See Comparison
NZ_CP146559.1 See Comparison
NZ_KM107839.1 See Comparison
NZ_CP146570.1 See Comparison
NZ_CP056550.1 See Comparison
NZ_CP049974.1 See Comparison
NZ_CP043412.1 See Comparison
NZ_CP056550.1 See Comparison
NZ_CP056255.1 See Comparison
NZ_CP097197.1 See Comparison
NZ_CP017225.1 See Comparison
NZ_CP060079.1 See Comparison
CP132213.1 See Comparison
NZ_CP146570.1 See Comparison
NZ_CP146559.1 See Comparison
NZ_CP017225.1 See Comparison
NZ_CP049974.1 See Comparison
NZ_KM107839.1 See Comparison
NZ_CP060079.1 See Comparison
NZ_CP056255.1 See Comparison
NZ_CP097197.1 See Comparison
CP132213.1 See Comparison
NZ_CP146570.1 See Comparison
NZ_CP146559.1 See Comparison
NZ_CP097197.1 See Comparison
NZ_KM107839.1 See Comparison
NZ_CP060079.1 See Comparison
NZ_CP056255.1 See Comparison
NZ_CP056550.1 See Comparison
NZ_CP049974.1 See Comparison
NZ_CP049974.1 See Comparison
NZ_CP017225.1 See Comparison
CP132213.1 See Comparison
NZ_CP056550.1 See Comparison
NZ_CP146570.1 See Comparison
NZ_CP146559.1 See Comparison
NZ_CP097197.1 See Comparison
NZ_KM107839.1 See Comparison
NZ_CP060079.1 See Comparison
NZ_CP056255.1 See Comparison
NZ_CP017225.1 See Comparison
CP132213.1 See Comparison
NZ_CP146570.1 See Comparison
NZ_CP146559.1 See Comparison
NZ_CP060079.1 See Comparison
NZ_CP049974.1 See Comparison
NZ_KM107839.1 See Comparison
NZ_CP056550.1 See Comparison
NZ_CP056255.1 See Comparison
NZ_CP060079.1 See Comparison
CP132213.1 See Comparison
NZ_CP097197.1 See Comparison
NZ_CP017225.1 See Comparison
NZ_CP146570.1 See Comparison
NZ_CP146559.1 See Comparison
NZ_CP056550.1 See Comparison
NZ_CP049974.1 See Comparison
NZ_KM107839.1 See Comparison
NZ_CP097197.1 See Comparison
NZ_CP056255.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2