Plasmid NZ_CP049718.1

Sequence

Nucleotide Information

Accession NZ_CP049718.1
Description Klebsiella pneumoniae strain 11KM256 plasmid pMBR_DHA-1_1CO, complete sequence
Source refseq
Topology circular
Length 55778 bp
GC Content 0.54 %
Created at NCBI July 17, 2020



Assembly

Genome Data Information

Accession GCF_013416035.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 14168398

PLASMID INFORMATION
Genotype ST11

GEOGRAPHICAL INFORMATION
Original Query 46.9480N;7.4474E
Original Query Type coordinates
Coordinates (Lat/Lon) 46.95/7.45
Address 1, Marktgasse, Gelbes Quartier, Stadtteil I, Bern, Bern-Mittelland administrative district, Bernese Mittelland administrative region, Bern, 3011, Switzerland

ECOSYSTEM
Original Query Canis lupus familiaris,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Canis lupus (9615)

DISEASE
Original Query Urinary tract infection
DOID/SYMP
  • Urinary tract infection (DOID:0080784 )
    • An urinary system disease that is characterized by an infection in any part of the urinary system, including the kidneys, ureters, bladder or urethra.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP104198.1 See Comparison
OX030700.1 See Comparison
NZ_CP071256.1 See Comparison
CP135472.1 See Comparison
NZ_LR822053.1 See Comparison
CP135472.1 See Comparison
NZ_CP126333.1 See Comparison
NZ_CP049955.1 See Comparison
NZ_CP039961.1 See Comparison
NZ_CP039949.1 See Comparison
NZ_CP039937.1 See Comparison
NZ_CP039958.1 See Comparison
NZ_CP039943.1 See Comparison
NZ_CP039946.1 See Comparison
NZ_CP104198.1 See Comparison
OX030700.1 See Comparison
NZ_CP071256.1 See Comparison
NZ_LT994837.1 See Comparison
NZ_LR822053.1 See Comparison
NZ_CP126333.1 See Comparison
NZ_CP049718.1 See Comparison
NZ_CP049955.1 See Comparison
NZ_CP104198.1 See Comparison
NZ_CP039961.1 See Comparison
NZ_CP039949.1 See Comparison
NZ_CP039937.1 See Comparison
NZ_CP039958.1 See Comparison
NZ_CP039943.1 See Comparison
NZ_LT994837.1 See Comparison
NZ_CP039946.1 See Comparison
NZ_CP071256.1 See Comparison
OX030700.1 See Comparison
OX030700.1 See Comparison
NZ_LR822053.1 See Comparison
CP135472.1 See Comparison
NZ_CP126333.1 See Comparison
NZ_CP049955.1 See Comparison
NZ_CP039961.1 See Comparison
NZ_CP039949.1 See Comparison
NZ_CP039937.1 See Comparison
NZ_CP039958.1 See Comparison
NZ_CP039943.1 See Comparison
NZ_CP039946.1 See Comparison
NZ_LT994837.1 See Comparison
NZ_CP104198.1 See Comparison
CP135472.1 See Comparison
NZ_CP071256.1 See Comparison
NZ_LR822053.1 See Comparison
OX030700.1 See Comparison
NZ_CP126333.1 See Comparison
NZ_CP039937.1 See Comparison
NZ_CP039958.1 See Comparison
NZ_CP039943.1 See Comparison
NZ_CP039946.1 See Comparison
NZ_LT994837.1 See Comparison
NZ_CP049955.1 See Comparison
NZ_CP039961.1 See Comparison
NZ_CP039949.1 See Comparison
NZ_CP104198.1 See Comparison
CP135472.1 See Comparison
NZ_CP071256.1 See Comparison
NZ_LR822053.1 See Comparison
NZ_CP126333.1 See Comparison
CP135472.1 See Comparison
NZ_CP049955.1 See Comparison
NZ_CP039958.1 See Comparison
NZ_CP039943.1 See Comparison
NZ_CP039946.1 See Comparison
NZ_LT994837.1 See Comparison
NZ_CP104198.1 See Comparison
NZ_CP071256.1 See Comparison
NZ_LR822053.1 See Comparison
NZ_CP039961.1 See Comparison
NZ_CP039949.1 See Comparison
NZ_CP039937.1 See Comparison
OX030700.1 See Comparison
NZ_CP126333.1 See Comparison
NZ_CP039943.1 See Comparison
NZ_CP039946.1 See Comparison
NZ_CP039961.1 See Comparison
NZ_CP039949.1 See Comparison
NZ_CP039937.1 See Comparison
NZ_CP039958.1 See Comparison
NZ_LT994837.1 See Comparison
NZ_CP049955.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore