Plasmid NZ_CP044154.1

Sequence

Nucleotide Information

Accession	NZ_CP044154.1
Description	Shigella flexneri strain AR-0425 plasmid pAR-0425-2, complete sequence
Source	refseq
Topology	circular
Length	222114 bp
GC Content	0.46 %
Created at NCBI	Oct. 7, 2019

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Shigella flexneri (623)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Shigella (620)
Species	Shigella_flexneri (623)
Strain

Assembly

Genome Data Information

Accession	GCF_008727235.1
Assembly Coverage	164.45

Biosample

Curated Collection Information

Accession	12648975

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	None
Original Query Type	None
Coordinates (Lat/Lon)
Address	None

ECOSYSTEM

Original Query	None
Classification	None
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

NZ_CP044153.1

Similar Plasmids

based on Mash distance

NZ_CP012142.1	See Comparison
NZ_CP007038.1	See Comparison
NC_017319.1	See Comparison
NZ_CP044157.1	See Comparison
NZ_CP044154.1	See Comparison
NZ_CP033511.1	See Comparison
NZ_CP020087.1	See Comparison
NZ_CP020337.1	See Comparison
NC_004851.1	See Comparison
AF386526.1	See Comparison
NZ_CP138847.1	See Comparison
CP100045.1	See Comparison
NZ_CP058591.1	See Comparison
NZ_CP121222.1	See Comparison
NZ_CP151324.1	See Comparison
NZ_CP151329.1	See Comparison
NZ_CP151345.1	See Comparison
NZ_CP034933.1	See Comparison
CP102228.1	See Comparison
CP102223.1	See Comparison
CP102220.1	See Comparison
CP102217.1	See Comparison
CP102214.1	See Comparison
CP102211.1	See Comparison
CP102208.1	See Comparison
CP102205.1	See Comparison
CP102201.1	See Comparison
NC_017319.1	See Comparison
NZ_CP094988.1	See Comparison
NZ_CP012142.1	See Comparison
NZ_CP007038.1	See Comparison
NZ_CP044157.1	See Comparison
NZ_CP034933.1	See Comparison
NZ_CP020087.1	See Comparison
NZ_CP020337.1	See Comparison
NC_004851.1	See Comparison
AF386526.1	See Comparison
CP100045.1	See Comparison
NZ_CP058591.1	See Comparison
NZ_CP033511.1	See Comparison
NZ_CP138847.1	See Comparison
NZ_CP121222.1	See Comparison
NZ_CP151324.1	See Comparison
NZ_CP151329.1	See Comparison
NZ_CP151345.1	See Comparison
CP102228.1	See Comparison
CP102223.1	See Comparison
CP102220.1	See Comparison
CP102217.1	See Comparison
CP102214.1	See Comparison
CP102211.1	See Comparison
CP102208.1	See Comparison
CP102205.1	See Comparison
CP102201.1	See Comparison
NZ_CP044157.1	See Comparison
NZ_CP094988.1	See Comparison
NZ_CP012142.1	See Comparison
NZ_CP007038.1	See Comparison
NC_017319.1	See Comparison
NZ_CP033511.1	See Comparison
NZ_CP058591.1	See Comparison
NZ_CP020087.1	See Comparison
NZ_CP020337.1	See Comparison
NC_004851.1	See Comparison
AF386526.1	See Comparison
CP100045.1	See Comparison
NZ_CP138847.1	See Comparison
NZ_CP044157.1	See Comparison
NZ_CP121222.1	See Comparison
NZ_CP151324.1	See Comparison
NZ_CP151329.1	See Comparison
NZ_CP151345.1	See Comparison
CP102228.1	See Comparison
CP102223.1	See Comparison
CP102220.1	See Comparison
CP102217.1	See Comparison
CP102214.1	See Comparison
CP102211.1	See Comparison
CP102208.1	See Comparison
CP102205.1	See Comparison
CP102201.1	See Comparison
NZ_CP012142.1	See Comparison
NZ_CP007038.1	See Comparison
NZ_CP034933.1	See Comparison
NZ_CP094988.1	See Comparison
NC_017319.1	See Comparison
NZ_CP033511.1	See Comparison
NZ_CP151324.1	See Comparison
NZ_CP020087.1	See Comparison
NZ_CP020337.1	See Comparison
NZ_CP138847.1	See Comparison
CP100045.1	See Comparison
NZ_CP058591.1	See Comparison
NC_004851.1	See Comparison
AF386526.1	See Comparison
NZ_CP121222.1	See Comparison
NZ_CP151329.1	See Comparison
NZ_CP151345.1	See Comparison
NZ_CP094988.1	See Comparison
NZ_CP034933.1	See Comparison
CP102228.1	See Comparison
CP102223.1	See Comparison
CP102220.1	See Comparison
CP102217.1	See Comparison
CP102214.1	See Comparison
CP102211.1	See Comparison
CP102208.1	See Comparison
CP102205.1	See Comparison
CP102201.1	See Comparison
NZ_CP012142.1	See Comparison
NZ_CP007038.1	See Comparison
NZ_CP044157.1	See Comparison
NC_017319.1	See Comparison
NZ_CP033511.1	See Comparison
NZ_CP020087.1	See Comparison
NZ_CP020337.1	See Comparison
NC_004851.1	See Comparison
AF386526.1	See Comparison
NZ_CP138847.1	See Comparison
CP102228.1	See Comparison
CP100045.1	See Comparison
NZ_CP058591.1	See Comparison
NZ_CP034933.1	See Comparison
NZ_CP121222.1	See Comparison
NZ_CP151324.1	See Comparison
NZ_CP151329.1	See Comparison
NZ_CP151345.1	See Comparison
CP102223.1	See Comparison
CP102220.1	See Comparison
CP102217.1	See Comparison
CP102214.1	See Comparison
CP102211.1	See Comparison
CP102208.1	See Comparison
CP102205.1	See Comparison
CP102201.1	See Comparison
NZ_CP007038.1	See Comparison
NZ_CP094988.1	See Comparison
CP100045.1	See Comparison
NZ_CP012142.1	See Comparison
NZ_CP044157.1	See Comparison
NZ_CP033511.1	See Comparison
NZ_CP020087.1	See Comparison
NZ_CP020337.1	See Comparison
NC_004851.1	See Comparison
AF386526.1	See Comparison
NC_017319.1	See Comparison
NZ_CP138847.1	See Comparison
NZ_CP121222.1	See Comparison
NZ_CP058591.1	See Comparison
NZ_CP151324.1	See Comparison
NZ_CP151329.1	See Comparison
NZ_CP151345.1	See Comparison
NZ_CP012142.1	See Comparison
NZ_CP094988.1	See Comparison
NZ_CP034933.1	See Comparison
CP102228.1	See Comparison
CP102223.1	See Comparison
CP102220.1	See Comparison
CP102217.1	See Comparison
CP102214.1	See Comparison
CP102211.1	See Comparison
CP102208.1	See Comparison
CP102205.1	See Comparison
CP102201.1	See Comparison
NZ_CP007038.1	See Comparison
NZ_CP044157.1	See Comparison
NC_017319.1	See Comparison
NZ_CP033511.1	See Comparison
NC_004851.1	See Comparison
AF386526.1	See Comparison
NZ_CP058591.1	See Comparison
NZ_CP020087.1	See Comparison
NZ_CP020337.1	See Comparison
NZ_CP138847.1	See Comparison
NZ_CP121222.1	See Comparison
NZ_CP151324.1	See Comparison
NZ_CP151329.1	See Comparison
NZ_CP151345.1	See Comparison
CP100045.1	See Comparison
NZ_CP094988.1	See Comparison
NZ_CP034933.1	See Comparison
CP102228.1	See Comparison
CP102223.1	See Comparison
CP102220.1	See Comparison
CP102217.1	See Comparison
CP102214.1	See Comparison
CP102211.1	See Comparison
CP102208.1	See Comparison
CP102205.1	See Comparison
CP102201.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2