Plasmid NC_004851.1

Sequence

Nucleotide Information

Accession NC_004851.1
Description Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence
Source refseq
Topology circular
Length 221618 bp
GC Content 0.46 %
Created at NCBI June 19, 2003



Assembly

Genome Data Information

Accession GCF_000006925.2
Assembly Coverage None




Similar Plasmids

based on Mash distance

NZ_CP034933.1 See Comparison
NZ_CP094988.1 See Comparison
CP102220.1 See Comparison
CP102217.1 See Comparison
NZ_CP007038.1 See Comparison
NZ_CP012142.1 See Comparison
NZ_CP044154.1 See Comparison
NC_017319.1 See Comparison
NC_004851.1 See Comparison
NZ_CP020087.1 See Comparison
NZ_CP020337.1 See Comparison
NZ_CP033511.1 See Comparison
AF386526.1 See Comparison
NZ_CP121222.1 See Comparison
CP100045.1 See Comparison
NZ_CP007038.1 See Comparison
NZ_CP151324.1 See Comparison
NZ_CP151329.1 See Comparison
NZ_CP151345.1 See Comparison
NZ_CP034933.1 See Comparison
CP102220.1 See Comparison
CP102217.1 See Comparison
NZ_CP094988.1 See Comparison
NZ_CP012142.1 See Comparison
NC_017319.1 See Comparison
NZ_CP044154.1 See Comparison
NZ_CP033511.1 See Comparison
NZ_CP020087.1 See Comparison
NZ_CP020337.1 See Comparison
AF386526.1 See Comparison
NZ_CP151324.1 See Comparison
CP100045.1 See Comparison
NZ_CP121222.1 See Comparison
NZ_CP151329.1 See Comparison
NZ_CP151345.1 See Comparison
NZ_CP034933.1 See Comparison
NZ_CP007038.1 See Comparison
CP102220.1 See Comparison
CP102217.1 See Comparison
NZ_CP094988.1 See Comparison
NZ_CP033511.1 See Comparison
NC_017319.1 See Comparison
NZ_CP044154.1 See Comparison
NZ_CP012142.1 See Comparison
AF386526.1 See Comparison
NZ_CP151324.1 See Comparison
CP100045.1 See Comparison
NZ_CP020087.1 See Comparison
NZ_CP020337.1 See Comparison
NZ_CP121222.1 See Comparison
NZ_CP151329.1 See Comparison
NZ_CP151345.1 See Comparison
NC_017319.1 See Comparison
NZ_CP094988.1 See Comparison
NZ_CP034933.1 See Comparison
CP102220.1 See Comparison
CP102217.1 See Comparison
NZ_CP012142.1 See Comparison
NZ_CP007038.1 See Comparison
NZ_CP044154.1 See Comparison
CP100045.1 See Comparison
NZ_CP020087.1 See Comparison
NZ_CP020337.1 See Comparison
NZ_CP033511.1 See Comparison
AF386526.1 See Comparison
NZ_CP151324.1 See Comparison
NZ_CP121222.1 See Comparison
NZ_CP151329.1 See Comparison
NZ_CP151345.1 See Comparison
NZ_CP007038.1 See Comparison
NZ_CP034933.1 See Comparison
NZ_CP012142.1 See Comparison
CP102220.1 See Comparison
CP102217.1 See Comparison
NZ_CP094988.1 See Comparison
NZ_CP044154.1 See Comparison
NC_017319.1 See Comparison
CP100045.1 See Comparison
NZ_CP033511.1 See Comparison
NZ_CP020087.1 See Comparison
NZ_CP020337.1 See Comparison
AF386526.1 See Comparison
NZ_CP151329.1 See Comparison
NZ_CP121222.1 See Comparison
NZ_CP151345.1 See Comparison
NC_017319.1 See Comparison
NZ_CP151324.1 See Comparison
CP102220.1 See Comparison
CP102217.1 See Comparison
NZ_CP094988.1 See Comparison
NZ_CP012142.1 See Comparison
NZ_CP007038.1 See Comparison
NZ_CP034933.1 See Comparison
NZ_CP033511.1 See Comparison
NZ_CP044154.1 See Comparison
CP100045.1 See Comparison
NZ_CP020087.1 See Comparison
NZ_CP020337.1 See Comparison
AF386526.1 See Comparison
NZ_CP121222.1 See Comparison
NZ_CP034933.1 See Comparison
NZ_CP151329.1 See Comparison
NZ_CP151345.1 See Comparison
NZ_CP151324.1 See Comparison
CP102220.1 See Comparison
CP102217.1 See Comparison
NZ_CP094988.1 See Comparison
NC_017319.1 See Comparison
NZ_CP012142.1 See Comparison
NZ_CP007038.1 See Comparison
NZ_CP020087.1 See Comparison
NZ_CP044154.1 See Comparison
NZ_CP033511.1 See Comparison
NZ_CP020337.1 See Comparison
NZ_CP121222.1 See Comparison
CP100045.1 See Comparison
AF386526.1 See Comparison
NZ_CP151324.1 See Comparison
NZ_CP151345.1 See Comparison
NZ_CP151329.1 See Comparison


Identical Plasmids

100% Sequence Identity


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2