Plasmid NZ_CP043319.1

Sequence

Nucleotide Information

Accession NZ_CP043319.1
Description Enterobacter chengduensis strain WCHECl-C4 = WCHECh050004 plasmid pLAP2_050004, complete sequence
Source refseq
Topology circular
Length 106698 bp
GC Content 0.52 %
Created at NCBI Aug. 26, 2019



Assembly

Genome Data Information

Accession GCF_001984825.2
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 6249239

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.6416N;104.061E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.64/104.06
Address Yulin, Wuhou District, Chengdu, High-Tech Zone (West), Sichuan, 610000, China

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query liver cirrhosis, cholecystitis
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

CP021898.1 See Comparison
NZ_CP010383.2 See Comparison
NZ_CP010385.1 See Comparison
NZ_CP043319.1 See Comparison
NZ_CP031572.1 See Comparison
NZ_CP030350.1 See Comparison
CP020526.1 See Comparison
CP128418.1 See Comparison
NZ_CP109675.1 See Comparison
NZ_CP047716.1 See Comparison
NZ_CP047731.1 See Comparison
NZ_CP047968.1 See Comparison
OW849308.1 See Comparison
OW967016.1 See Comparison
OW849201.1 See Comparison
NZ_CP066110.1 See Comparison
NZ_CP066103.1 See Comparison
CP021898.1 See Comparison
NZ_CP085781.1 See Comparison
NZ_CP031572.1 See Comparison
NZ_CP010383.2 See Comparison
NZ_CP010385.1 See Comparison
NZ_CP030350.1 See Comparison
NZ_CP047716.1 See Comparison
CP020526.1 See Comparison
CP128418.1 See Comparison
NZ_CP047731.1 See Comparison
NZ_CP047968.1 See Comparison
OW849201.1 See Comparison
NZ_CP109675.1 See Comparison
OW849308.1 See Comparison
OW967016.1 See Comparison
NZ_CP066110.1 See Comparison
NZ_CP066103.1 See Comparison
CP020526.1 See Comparison
NZ_CP085781.1 See Comparison
CP021898.1 See Comparison
NZ_CP031572.1 See Comparison
NZ_CP030350.1 See Comparison
NZ_CP010383.2 See Comparison
NZ_CP010385.1 See Comparison
NZ_CP047716.1 See Comparison
CP128418.1 See Comparison
NZ_CP047731.1 See Comparison
NZ_CP047968.1 See Comparison
NZ_CP066110.1 See Comparison
OW967016.1 See Comparison
OW849201.1 See Comparison
NZ_CP109675.1 See Comparison
OW849308.1 See Comparison
NZ_CP066103.1 See Comparison
CP021898.1 See Comparison
NZ_CP085781.1 See Comparison
NZ_CP030350.1 See Comparison
NZ_CP031572.1 See Comparison
NZ_CP010383.2 See Comparison
NZ_CP010385.1 See Comparison
CP128418.1 See Comparison
CP020526.1 See Comparison
NZ_CP066110.1 See Comparison
NZ_CP109675.1 See Comparison
OW849308.1 See Comparison
NZ_CP047716.1 See Comparison
NZ_CP047731.1 See Comparison
NZ_CP047968.1 See Comparison
OW967016.1 See Comparison
OW849201.1 See Comparison
NZ_CP066103.1 See Comparison
NZ_CP010383.2 See Comparison
NZ_CP085781.1 See Comparison
CP021898.1 See Comparison
NZ_CP010385.1 See Comparison
CP020526.1 See Comparison
NZ_CP030350.1 See Comparison
NZ_CP031572.1 See Comparison
NZ_CP047968.1 See Comparison
CP128418.1 See Comparison
NZ_CP047716.1 See Comparison
NZ_CP047731.1 See Comparison
NZ_CP109675.1 See Comparison
OW849308.1 See Comparison
OW967016.1 See Comparison
CP021898.1 See Comparison
OW849201.1 See Comparison
NZ_CP085781.1 See Comparison
NZ_CP066110.1 See Comparison
NZ_CP066103.1 See Comparison
NZ_CP030350.1 See Comparison
NZ_CP010383.2 See Comparison
NZ_CP010385.1 See Comparison
NZ_CP031572.1 See Comparison
OW967016.1 See Comparison
CP020526.1 See Comparison
CP128418.1 See Comparison
NZ_CP047716.1 See Comparison
NZ_CP047731.1 See Comparison
NZ_CP047968.1 See Comparison
NZ_CP109675.1 See Comparison
OW849308.1 See Comparison
OW849201.1 See Comparison
NZ_CP066110.1 See Comparison
NZ_CP066103.1 See Comparison
NZ_CP085781.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore