Plasmid CP128418.1
Sequence
Nucleotide Information
| Accession | CP128418.1 |
|---|---|
| Description | Enterobacter hormaechei subsp. xiangfangensis strain 090095 plasmid pLAP2_090095, complete sequence |
| Source | insd |
| Topology | circular |
| Length | 107923 bp |
| GC Content | 0.52 % |
| Created at NCBI | June 21, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Enterobacter hormaechei (1296536) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Enterobacter (547) |
| Species | Enterobacter_hormaechei (158836) |
| Strain |
Biosample
Curated Collection Information
| Accession | 19314267 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | China,Chengdu,Sichuan |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 30.64/104.07 |
| Address | China,Chengdu,Sichuan |
ECOSYSTEM
| Original Query | Homo sapiens,pure culture,sputum |
|---|---|
| Classification | cell_culture,host_associated,respiratory_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | qnrS1 | copy | ||
| amrfinderplus | blaLAP-2 | copy | ||
| PGAG | repA | copy | ||
| PGAG | helix-turn-helix transcriptional regulator | copy | ||
| PGAG | multidrug effflux MFS transporter | copy | ||
| PGAG | AAA family ATPase | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | LysE family transporter | copy | ||
| PGAG | cyclic diguanylate phosphodiesterase | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 118 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | CP010383_00040 | MOBP | 57594 | 60290 | plus | 100 | 100 | 0 | 1787 |
| oriT | NC_016039 | MOB_unknown | 57120 | 57210 | minus | 100 | 100 | 5.4799999999999986e-40 | 169 |
| replicon | 000787__CP010385_00030 | rep_cluster_1444 | 1 | 867 | plus | 100 | 100 | 0 | 1602 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |