Plasmid NZ_CP040352.1

Sequence

Nucleotide Information

Accession NZ_CP040352.1
Description Klebsiella pneumoniae strain P39 plasmid p.P39Z1, complete sequence
Source refseq
Topology circular
Length 204102 bp
GC Content 0.50 %
Created at NCBI June 25, 2023



Assembly

Genome Data Information

Accession GCF_030323605.1
Assembly Coverage 196


Biosample

Curated Collection Information
Accession 11649358

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Tangshan
Original Query Type name
Coordinates (Lat/Lon) 39.63/118.17
Address China,Tangshan

ECOSYSTEM
Original Query Homo sapiens,whole organism
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP144320.1 See Comparison
NZ_CP142988.1 See Comparison
NZ_MN058044.1 See Comparison
NZ_CP070899.1 See Comparison
NZ_CP083752.1 See Comparison
NZ_CP089020.1 See Comparison
NZ_CP082208.1 See Comparison
CP041024.1 See Comparison
NZ_CP030314.1 See Comparison
NZ_CP030321.1 See Comparison
NZ_CP133876.1 See Comparison
NZ_CP040352.1 See Comparison
NZ_CP132616.1 See Comparison
CP128721.1 See Comparison
NZ_CP129203.1 See Comparison
NZ_CP122567.1 See Comparison
NZ_CP122579.1 See Comparison
NZ_CP132616.1 See Comparison
NZ_CP144320.1 See Comparison
NZ_CP070899.1 See Comparison
NZ_CP083752.1 See Comparison
CP041024.1 See Comparison
NZ_CP142988.1 See Comparison
NZ_MN058044.1 See Comparison
NZ_CP082208.1 See Comparison
NZ_CP089020.1 See Comparison
NZ_CP030314.1 See Comparison
NZ_CP030321.1 See Comparison
NZ_CP133876.1 See Comparison
NZ_CP142988.1 See Comparison
NZ_CP129203.1 See Comparison
NZ_CP144320.1 See Comparison
CP128721.1 See Comparison
NZ_CP122579.1 See Comparison
NZ_CP122567.1 See Comparison
NZ_CP089020.1 See Comparison
NZ_MN058044.1 See Comparison
NZ_CP082208.1 See Comparison
NZ_CP070899.1 See Comparison
NZ_CP083752.1 See Comparison
NZ_CP133876.1 See Comparison
NZ_CP030314.1 See Comparison
NZ_CP030321.1 See Comparison
CP041024.1 See Comparison
NZ_CP129203.1 See Comparison
NZ_CP132616.1 See Comparison
NZ_CP142988.1 See Comparison
NZ_CP144320.1 See Comparison
CP128721.1 See Comparison
NZ_CP122579.1 See Comparison
NZ_CP122567.1 See Comparison
NZ_CP070899.1 See Comparison
NZ_MN058044.1 See Comparison
NZ_CP082208.1 See Comparison
NZ_CP083752.1 See Comparison
NZ_CP132616.1 See Comparison
NZ_CP089020.1 See Comparison
NZ_CP133876.1 See Comparison
NZ_CP030314.1 See Comparison
NZ_CP030321.1 See Comparison
CP041024.1 See Comparison
NZ_CP144320.1 See Comparison
CP128721.1 See Comparison
NZ_CP122579.1 See Comparison
NZ_CP122567.1 See Comparison
NZ_CP129203.1 See Comparison
NZ_CP142988.1 See Comparison
NZ_MN058044.1 See Comparison
NZ_CP089020.1 See Comparison
NZ_CP070899.1 See Comparison
NZ_CP083752.1 See Comparison
NZ_CP082208.1 See Comparison
NZ_CP133876.1 See Comparison
NZ_CP030314.1 See Comparison
NZ_CP030321.1 See Comparison
CP041024.1 See Comparison
NZ_CP129203.1 See Comparison
CP128721.1 See Comparison
NZ_CP132616.1 See Comparison
NZ_CP122579.1 See Comparison
NZ_CP122567.1 See Comparison
NZ_CP030314.1 See Comparison
NZ_CP144320.1 See Comparison
NZ_MN058044.1 See Comparison
NZ_CP070899.1 See Comparison
NZ_CP082208.1 See Comparison
NZ_CP089020.1 See Comparison
NZ_CP142988.1 See Comparison
NZ_CP083752.1 See Comparison
NZ_CP030321.1 See Comparison
CP041024.1 See Comparison
NZ_CP129203.1 See Comparison
NZ_CP132616.1 See Comparison
NZ_CP133876.1 See Comparison
CP128721.1 See Comparison
NZ_CP122579.1 See Comparison
NZ_CP122567.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore