Plasmid NZ_CP039302.1

Sequence

Nucleotide Information

Accession NZ_CP039302.1
Description Escherichia coli strain PigCaeca_1 plasmid unnamed4, complete sequence
Source refseq
Topology circular
Length 4664 bp
GC Content 0.51 %
Created at NCBI April 24, 2019



Assembly

Genome Data Information

Accession GCF_004801575.1
Assembly Coverage 30


Biosample

Curated Collection Information
Accession 11268909

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 53.91N;1.03W
Original Query Type coordinates
Coordinates (Lat/Lon) 53.91/-1.03
Address Wheldrake Lane, Deighton, York, England, YO19 4SQ, United Kingdom

ECOSYSTEM
Original Query pig,Single colony culture,feces
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NC_019135.1 See Comparison
CP058029.1 See Comparison
CP058034.1 See Comparison
NZ_CP157118.1 See Comparison
CP057383.1 See Comparison
CP057367.1 See Comparison
NZ_CP063346.1 See Comparison
NZ_CP058061.1 See Comparison
CP099156.1 See Comparison
CP099301.1 See Comparison
CP058034.1 See Comparison
NZ_CP157118.1 See Comparison
CP058034.1 See Comparison
NZ_CP063346.1 See Comparison
CP058029.1 See Comparison
NZ_CP058061.1 See Comparison
CP099301.1 See Comparison
NZ_CP099362.1 See Comparison
CP099104.1 See Comparison
NC_019135.1 See Comparison
CP057383.1 See Comparison
CP057367.1 See Comparison
NZ_CP099362.1 See Comparison
CP099104.1 See Comparison
CP099156.1 See Comparison
NC_019135.1 See Comparison
NZ_CP157118.1 See Comparison
CP057383.1 See Comparison
CP057367.1 See Comparison
CP058029.1 See Comparison
NZ_CP063346.1 See Comparison
NZ_CP058061.1 See Comparison
CP099104.1 See Comparison
NZ_CP099362.1 See Comparison
CP099156.1 See Comparison
CP099301.1 See Comparison
NZ_CP157118.1 See Comparison
NC_019135.1 See Comparison
NZ_CP039302.1 See Comparison
CP058034.1 See Comparison
CP057383.1 See Comparison
CP057367.1 See Comparison
NZ_CP063346.1 See Comparison
NZ_CP157118.1 See Comparison
NZ_CP099362.1 See Comparison
CP099104.1 See Comparison
CP099156.1 See Comparison
CP099301.1 See Comparison
CP058029.1 See Comparison
NZ_CP058061.1 See Comparison
NC_019135.1 See Comparison
CP058034.1 See Comparison
CP057383.1 See Comparison
CP057367.1 See Comparison
NZ_CP063346.1 See Comparison
CP058029.1 See Comparison
NZ_CP058061.1 See Comparison
NZ_CP099362.1 See Comparison
CP099104.1 See Comparison
CP099156.1 See Comparison
CP099301.1 See Comparison
CP057383.1 See Comparison
NC_019135.1 See Comparison
NZ_CP157118.1 See Comparison
CP058034.1 See Comparison
CP057367.1 See Comparison
NZ_CP063346.1 See Comparison
CP099104.1 See Comparison
CP099156.1 See Comparison
CP099301.1 See Comparison
CP058029.1 See Comparison
NZ_CP058061.1 See Comparison
NZ_CP099362.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore