Plasmid NZ_CP035539.1

Sequence

Nucleotide Information

Accession NZ_CP035539.1
Description Klebsiella pneumoniae subsp. pneumoniae strain CCRI-22199 plasmid pKp199-4, complete sequence
Source refseq
Topology circular
Length 3359 bp
GC Content 0.52 %
Created at NCBI Aug. 15, 2019



Assembly

Genome Data Information

Accession GCF_004141975.1
Assembly Coverage 140


Biosample

Curated Collection Information
Accession 9692822

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 46.8371N;71.2265W
Original Query Type coordinates
Coordinates (Lat/Lon) 46.84/-71.23
Address Hôpital de l'Enfant-Jésus, Avenue De la Ronde, Maizerets, La Cité-Limoilou, Quebec, Urban agglomeration of Québec, Capitale-Nationale, Quebec, G1J 2E1, Canada

ECOSYSTEM
Original Query Homo sapiens,anal sample
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 2 months
Host-associated Sex male

DISEASE
Original Query verification for resistant bacteria
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore