Plasmid NZ_CP023979.1

Sequence

Nucleotide Information

Accession NZ_CP023979.1
Description Klebsiella variicola strain X39 plasmid pX39-2, complete sequence
Source refseq
Topology circular
Length 3358 bp
GC Content 0.52 %
Created at NCBI Sept. 2, 2018



Assembly

Genome Data Information

Accession GCF_003429625.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 5439979

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 39.56N;116.20000000E
Original Query Type coordinates
Coordinates (Lat/Lon) 39.56/116.20
Address Zhuozhou City, Baoding City, Hebei, China

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 46
Host-associated Sex male

DISEASE
Original Query CHD&HBP&DM
DOID/SYMP
  • Diabetes mellitus (DOID:9351 )
    • A glucose metabolism disease that is characterized by chronic hyperglycaemia with disturbances of carbohydrate, fat and protein metabolism resulting from defects in insulin secretion, insulin action, or both.
  • Coronary artery disease (DOID:3393 )
    • An artery disease that is characterized by plaque building up along the inner walls of the arteries of the heart resulting in a narrowing of the arteries and a reduced blood supply to the cardiac muscles.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2