Plasmid NZ_CP035480.1

Sequence

Nucleotide Information

Accession NZ_CP035480.1
Description Escherichia coli strain U13A plasmid pU13A_C, complete sequence
Source refseq
Topology circular
Length 5209 bp
GC Content 0.49 %
Created at NCBI Feb. 7, 2019



Assembly

Genome Data Information

Accession GCF_004135165.1
Assembly Coverage 120


Biosample

Curated Collection Information
Accession 10817700

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,Utah
Original Query Type name
Coordinates (Lat/Lon) 39.42/-111.71
Address USA,Utah

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP035723.1 See Comparison
NZ_CP035472.1 See Comparison
NZ_CP035519.1 See Comparison
NC_002809.1 See Comparison
CP134928.1 See Comparison
NZ_CP139799.1 See Comparison
CP056804.1 See Comparison
CP056804.1 See Comparison
NZ_AP022046.1 See Comparison
NZ_CP095503.1 See Comparison
NZ_CP035723.1 See Comparison
NZ_CP035472.1 See Comparison
NZ_CP035519.1 See Comparison
NZ_CP054348.1 See Comparison
NZ_LR898880.1 See Comparison
NC_002809.1 See Comparison
CP134928.1 See Comparison
NZ_CP139799.1 See Comparison
NZ_CP095503.1 See Comparison
NZ_CP054348.1 See Comparison
NZ_AP022046.1 See Comparison
NZ_LR898880.1 See Comparison
CP056804.1 See Comparison
NC_002809.1 See Comparison
CP134928.1 See Comparison
NZ_CP139799.1 See Comparison
NZ_CP035723.1 See Comparison
NZ_CP035472.1 See Comparison
NZ_CP035519.1 See Comparison
NZ_AP022046.1 See Comparison
NZ_LR898880.1 See Comparison
NZ_CP054348.1 See Comparison
NZ_CP139799.1 See Comparison
NZ_CP095503.1 See Comparison
NZ_CP035472.1 See Comparison
NZ_CP035519.1 See Comparison
NZ_CP035723.1 See Comparison
NC_002809.1 See Comparison
CP134928.1 See Comparison
NZ_CP054348.1 See Comparison
CP056804.1 See Comparison
NZ_CP035519.1 See Comparison
NZ_LR898880.1 See Comparison
NZ_AP022046.1 See Comparison
NZ_CP095503.1 See Comparison
NC_002809.1 See Comparison
NZ_CP035723.1 See Comparison
NZ_CP035472.1 See Comparison
CP134928.1 See Comparison
CP056804.1 See Comparison
NZ_CP139799.1 See Comparison
CP134928.1 See Comparison
NZ_CP095503.1 See Comparison
NZ_CP035723.1 See Comparison
NZ_CP035472.1 See Comparison
NZ_CP035519.1 See Comparison
NZ_CP035480.1 See Comparison
NZ_CP054348.1 See Comparison
NZ_LR898880.1 See Comparison
NZ_AP022046.1 See Comparison
NC_002809.1 See Comparison
CP056804.1 See Comparison
NZ_CP139799.1 See Comparison
NZ_CP054348.1 See Comparison
NZ_LR898880.1 See Comparison
NZ_CP095503.1 See Comparison
NZ_AP022046.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore